| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 792267 | NA (NA) | 9 (0.070) | 6/164 | NT | NA | noncoding (4/34 nt) | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 792297 | NA (NA) | noncoding (34/34 nt) | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGgccggag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/792170‑792267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT < NC_000913/792297‑792192 TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGC < 1:1478060/100‑1TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGC > 2:2884924/1‑100TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGC > 1:3858435/1‑100 GCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCC < 2:3365839/100‑1 CGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCG < 1:3928140/100‑1 CGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCG > 1:3244454/1‑100 CGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGA < 2:2108304/100‑1 CGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCG < 2:3478299/98‑1 AAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCC < 1:2537562/100‑1 GTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGCCGGCCTTAGCACCGTCTCCGGC < 2:2272407/99‑1 TATGAATGATTGCGCTTTTTATCTTAAAAAAGACTCGTTTTTATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAAC < 1:153387/100‑1 TATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAAC < 1:3306324/100‑1 ATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACG < 2:1940718/100‑1 ATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACG < 2:532136/100‑1 ATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGACCAACG < 1:1454557/100‑1 GATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGA < 1:1576806/100‑1 GACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTC < 1:314044/100‑1 GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACC < 2:3381040/100‑1 GCCGGAGGCGGCCTTACCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATTAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACC < 2:3189660/100‑1 CCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCC > 2:1893903/1‑100 CCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCC > 1:3019106/1‑100 CCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATCCATAAACCC > 1:2333448/1‑100 CCGGAGGCGGACTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACTGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATACACCC > 2:656402/1‑100 CGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAAATAAAAAGAGAAATCATTCATAAACCCT > 1:3633993/1‑100 GGAGGCGTCCTTAGCACCCTCTCCGGCCAACGGTTCTACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTC < 1:970339/100‑1 GGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT < 1:2251698/100‑1 GGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT > 1:2100773/1‑100 TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGgccggag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/792170‑792267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT < NC_000913/792297‑792192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |