| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1508794 = | NA (NA) | 7 (0.050) | 4/166 | NT | NA | noncoding (4/33 nt) | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1508825 = | NA (NA) | intergenic (+83/+9) | ydcP/yncJ | putative peptidase/uncharacterized protein | |||||
CGGAAGGTTTGCGCGAGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1508898‑1508794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcaTCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGC > NC_000913/1508825‑1508921 CGGAAGGTTTGCGCGACCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGATGCGGCGTAACGCCTTACC < 2:2283453/100‑1 gcTTTGCGCGAGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCA < 2:2020248/98‑1 GGTTTGCGCGAGCATTTTTACTGGAAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGATGCGGCGTAACGCCTTACACGGCA > 2:2471532/1‑100 CATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCG > 1:3906124/1‑99 CATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGAATGCGCGATTTTTGCCAGTAAAAATG > 1:1773512/1‑95 ATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCG > 1:1709258/1‑100 ATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCG > 1:3515304/1‑100 TTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGC > 1:2099832/1‑100 TTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGATTGCGCGATTTTTGCCAGTAAAAATGCTCGCGC > 1:1828522/1‑100 GATGCCGGATGCGGCGTAACGCCTTACCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAA > 1:2460931/1‑100 CGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATACTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCAC > 1:308447/1‑100 GGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACG > 1:2151281/1‑100 GCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGC < 1:429560/100‑1 GCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGC < 2:2473895/100‑1 CGGAAGGTTTGCGCGAGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGATGCGGCGTAACGCCTTACCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1508898‑1508794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcaTCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGC > NC_000913/1508825‑1508921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |