| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2282890 | NA (NA) | 8 (0.060) | 7/164 | NT | NA | noncoding (4/34 nt) | REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 2282920 | NA (NA) | noncoding (34/34 nt) | REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGgccagat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2282794‑2282890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTACA < NC_000913/2282920‑2282815 GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCC > 1:1001734/1‑100GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCC < 2:791651/100‑1GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCC > 2:609984/1‑100GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCC < 2:3113424/100‑1 CGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCA > 1:1100438/1‑100 CGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCA > 1:3400845/1‑100 CGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCA < 2:1302710/100‑1 CTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGA < 2:1962813/100‑1 CTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGA < 1:762834/100‑1 CTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGA > 2:1283155/1‑100 CTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTACAGGCCAGA > 1:2783759/1‑100 GTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCT > 2:1420784/1‑100 AAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTG < 1:1420799/100‑1 CCCCTCTCTGGCGGTGTTTTTTTTATCTTCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCTG < 1:245647/100‑1 CCCCGCTTCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCT < 1:869353/99‑1 CCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCTG < 1:2358978/100‑1 CCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCTG < 1:313871/100‑1 CCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCTG < 1:185324/100‑1 GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAG < 1:472550/100‑1 AGGCCAGATAAGGCGTTCACGCCGCATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGG > 1:2541732/1‑99 GGCCAGATAAGGCGTTCACGCCGCATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTT > 2:336172/1‑100 GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTT > 1:2701360/1‑100 GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTT < 1:3523272/100‑1 CCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTT > 1:736488/1‑100 CCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTT > 1:609991/1‑100 CCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCAGGGTTTT > 2:2096750/1‑100 CCAGATAAGGCGTTCACGCCGCATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGACCGGGGTTTT > 2:645097/1‑100 CAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGATTTT > 2:3117440/1‑100 CAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCACATACAAAAAACCCCGC‑CGGAGCGGGGTTTTT < 1:2648589/100‑1 AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCATATACAAAAAACCCCGCTCCG‑GCGGGGTTTTTT < 1:3724326/100‑1 AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAATCCCCGC‑CGGAGCGGGGTTTTTT < 2:965109/100‑1 AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCG‑GCGGGGTTTTTT < 1:1440923/100‑1 AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTT < 1:1822464/100‑1 AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTT < 1:1363348/100‑1 AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTT > 2:2425844/1‑100 GATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGTAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑TCCGGCGGGGTTTTTTg < 1:3303016/100‑2 GATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCG‑GCGGGGTTTTTTg < 1:3170020/100‑2 GATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCG‑GCGGGGTTTTTTg < 1:1224134/100‑2 GATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑TCCGGCGGGGTTTTTTn < 2:536562/100‑2 GATGCGGCGTGAACGCCTTAGCTGGACTGCAAAAAATAGCTATACCGTAATCAGGCATAATCTGCAGATACAATATTCCCCGC‑CGGAGCGGGGTTTTTT < 2:615988/99‑1 ATGCGGCGTGAACGCCTTATCTGGCCTGTAAAAAATAGCATTACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTAC < 1:2197666/100‑1 ATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAATTCCCCGC‑TCCGGCGGGGTTTTTT < 2:3263300/98‑1 ATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAATCCCCGC‑CGGAGCGGGGTTTTTTAC < 2:1863586/100‑1 TGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATGCCGTAATCAGGCATAATCTGCAGATACAAAAGACCCCGC‑CGGAGCGGGGTTTTTTA < 2:3166686/98‑1 TGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑TCCGGCGGGGTTTTTTg < 1:3002017/98‑2 TGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑TCCGGCGGGGTTTTTT < 2:1864665/97‑1 TGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTACA < 1:2252166/100‑1 TGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTACA < 2:542949/100‑1 GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGgccagat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2282794‑2282890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTACA < NC_000913/2282920‑2282815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |