New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2662541NA (NA)16 (0.120) 6/164 NT NA noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 2662574 NA (NA)noncoding (266/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 130 total aligned reads displayed.

TCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGG  >  NC_000913/2662442‑2662640
                                                                                                   |                                                                                                   
tCACTGTAGGTCTGATAATACTCATTTCGCTTCTCTTCATGCAACTGCTGTCGGATGCGGCGTTAACGCCTTAGCCGACCTACGGTTCTGTTCACTGTAg                                                                                                     <  1:3128269/100‑1 (MQ=11)
 cACTGTAGGCCTGATAAGACGTATTACGCGTCGTATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    <  1:1476916‑M1/100‑2 (MQ=255)
 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTGTGTTCACTGTAGg                                                                                                    >  2:2451744‑M1/1‑99 (MQ=255)
 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    <  1:3086525‑M1/100‑2 (MQ=255)
 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    <  1:323425‑M1/100‑2 (MQ=255)
 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAACCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    >  1:3275679‑M1/1‑99 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTTCACTGTAGg                                                                                                    <  2:152706‑M1/98‑2 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  <  1:3009596‑M1/100‑4 (MQ=255)
   cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  <  1:1478025‑M1/100‑4 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCTGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                <  1:3742058‑M1/100‑6 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                >  2:2804273‑M1/1‑95 (MQ=255)
     gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                >  2:1127496‑M1/1‑95 (MQ=255)
      tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGCCGTGAACGCCTTATCCGACCTACGTTTCTGTTCACTGTAGgcctga                                                                                               >  2:374157‑M1/1‑94 (MQ=255)
       aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgat                                                                                              <  1:420433‑M1/100‑8 (MQ=255)
        ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgat                                                                                              >  2:2951952‑M1/1‑92 (MQ=255)
                              gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgataagacgcgtaatgcgtcttatca                                                                       <  2:77661‑M1/100‑31 (MQ=255)
                               tCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcag                                                                      <  1:1554318‑M1/100‑32 (MQ=255)
                               tCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcag                                                                      <  1:1554298‑M1/100‑32 (MQ=255)
                                cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcagg                                                                     <  1:3302720‑M1/100‑33 (MQ=255)
                                cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcagg                                                                     <  1:2740683‑M1/100‑33 (MQ=255)
                                 gtatcAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcagg                                                                     <  2:2212999‑M1/97‑33 (MQ=255)
                                 gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggc                                                                    <  1:3664576‑M1/100‑34 (MQ=255)
                                  cATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcc                                                                   <  2:2907306‑M1/100‑35 (MQ=255)
                                   aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcct                                                                  <  1:3362140‑M1/100‑36 (MQ=255)
                                   aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcc                                                                   <  1:1832406‑M1/99‑35 (MQ=255)
                                           aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                          <  1:1039409/100‑1 (MQ=11)
                                           aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                          <  1:1323429/100‑1 (MQ=11)
                                             ggCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGAATCAGGCAACGGCTGTTAt                                                        >  2:3366055/1‑100 (MQ=17)
                                              gCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                       >  1:456284/1‑100 (MQ=33)
                                                tatCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGTGTCGCATCAGGCAACGGCTGTTATTCg                                                     <  2:2377753/98‑1 (MQ=255)
                                                ggTCGGATAAGGCGTTCACGCCGAATACGAACTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                      >  2:583371/2‑99 (MQ=11)
                                                 gTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg                                                    <  1:165033/100‑1 (MQ=38)
                                                 gTCGGATAAGGCGTTCACGCCGCATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTAgg                                                    >  2:2156936/1‑100 (MQ=11)
                                                  tCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGc                                                   <  1:2701062/100‑1 (MQ=38)
                                                   cGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                     <  2:1399167/97‑1 (MQ=35)
                                                   cGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGcc                                                  <  2:111237/100‑1 (MQ=40)
                                                    ggATGCGGCGTGAACGCCTTATCCGATCTATGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCt                                                 <  1:3192151/100‑1 (MQ=255)
                                                    ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCt                                                 <  1:1043067/100‑1 (MQ=40)
                                                     gATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                >  2:3799857/1‑100 (MQ=255)
                                                      aTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:1629363/100‑1 (MQ=255)
                                                       tGCGGCGTGAACGCCTTATTCGTCCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:2454385/99‑1 (MQ=255)
                                                       tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               >  1:1651055/1‑99 (MQ=255)
                                                       tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt                                              <  1:2799546/100‑1 (MQ=255)
                                                       tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACACATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt                                              >  1:2228068/1‑100 (MQ=255)
                                                          ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTa                                            >  2:1358869/1‑99 (MQ=255)
                                                          ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                           <  2:2220924/100‑1 (MQ=255)
                                                           gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTTTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                          <  2:2633920/100‑1 (MQ=255)
                                                           gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                          <  2:177727/100‑1 (MQ=255)
                                                            cgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt                                         >  1:2600384/1‑100 (MQ=255)
                                                             gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt                                        <  1:165075/100‑1 (MQ=255)
                                                              tGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt                                       <  2:3275647/100‑1 (MQ=255)
                                                               gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                      >  1:3485684/1‑100 (MQ=255)
                                                               gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                      >  2:1060898/1‑100 (MQ=255)
                                                                  cGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGAGAAGACGCATTACGCGCCGCATCAGGCAACGGCTGTTATTCTGCCTTGTTACCTTTATTc                                   <  2:1382059/100‑1 (MQ=17)
                                                                  cGCCTTATCCGACCTACGGTTCTGTTCACTTTAGGCCTGATAAGACGCATTACACATCACATCAGGCAAAAGATGTTATTCGGCCTTGTTACCTTTATTc                                   >  1:1292209/1‑100 (MQ=17)
                                                                  cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt                                     >  1:969872/1‑98 (MQ=255)
                                                                  cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   <  1:2820003/100‑1 (MQ=255)
                                                                  cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGACAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   >  1:3178500/1‑100 (MQ=255)
                                                                  cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCAACAGGCAACGACAGTTATTCGGCCTTGTTACCTTTATTc                                   >  1:2356144/1‑100 (MQ=255)
                                                                   gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                  >  1:3045686/1‑100 (MQ=255)
                                                                    ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg                                 >  1:3455269/1‑100 (MQ=255)
                                                                     cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                >  1:532182/1‑100 (MQ=255)
                                                                     cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                <  2:3757239/100‑1 (MQ=255)
                                                                     cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                <  1:2451767/100‑1 (MQ=255)
                                                                     cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                <  1:2790542/100‑1 (MQ=255)
                                                                       tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACTCATTACACGTCGCATCAAGCAACGGCAGTTATTCGTCCTTGTTACCTTTATTctgc                                >  1:1119941/1‑98 (MQ=18)
                                                                       tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg                              <  1:1972178/100‑1 (MQ=255)
                                                                        aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGTATTACGCGTTGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc                             <  1:207596/100‑1 (MQ=255)
                                                                        aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc                             <  2:2800813/100‑1 (MQ=255)
                                                                          ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           <  2:1596525/100‑1 (MQ=255)
                                                                          ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           <  2:3889869/100‑1 (MQ=255)
                                                                              ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       >  1:2096840/1‑100 (MQ=255)
                                                                              ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       >  1:1389729/1‑100 (MQ=255)
                                                                              ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       >  1:3739244/1‑100 (MQ=255)
                                                                                tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGAATCAGGCAACGGCTGTTATTCGTCCTTGTTACCTTTATTCTGCTGCTCAATAGa                     <  2:1575189/100‑1 (MQ=255)
                                                                                tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTAGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGa                     >  2:1875662/1‑100 (MQ=255)
                                                                                  cGGTTCTGTTCACTGTAGGCCTGATAAGACTAATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   <  1:3221203/100‑1 (MQ=255)
                                                                                  cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   <  2:3241011/100‑1 (MQ=255)
                                                                                  cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTAGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   >  2:2130413/1‑100 (MQ=255)
                                                                                   ggTTCTGTTCTCTGTAGACGTGGGTAGACTCATTACGCTTCGCATCATGCAACGTCTGTTAGTCGGTCTTGTTTCCTTTATTCTGCTGCTTAAt                        <  2:40133/94‑1 (MQ=255)
                                                                                   ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaacc                  >  2:1110049/1‑98 (MQ=255)
                                                                                   ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                  <  1:2678238/100‑1 (MQ=255)
                                                                                    gtttttttCACTTTATGTCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   <  1:1520771/92‑1 (MQ=25)
                                                                                     ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa                <  1:1423820/100‑1 (MQ=255)
                                                                                      tCTGTTCACTGTAGGCCTGATAAGACGCATTTCTCTTTGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg               <  1:1477481/100‑1 (MQ=25)
                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa             >  2:1048942/1‑100 (MQ=255)
                                                                                           tCACTGTAGGCCTGATAAGACGCAATACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGACAGAATcc          >  2:329368/1‑100 (MQ=255)
                                                                                            cgcTGTAGGCCTGATAAGACGCATCACGCGTCGCATCAGGCAACGGCTGTTATTAGGCCTTGTTACCTTTATTTTGCTGCTCAATAGCAGCCAGAATccc         >  2:2625002/3‑100 (MQ=25)
                                                                                            cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc         >  2:2043424/1‑100 (MQ=255)
                                                                                            cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc         >  2:3364055/1‑100 (MQ=255)
                                                                                            cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc         >  1:1896730/1‑100 (MQ=255)
                                                                                             aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg        <  2:3932497/100‑1 (MQ=255)
                                                                                             aCTGTAGGCCTGATAAGACGCATTACGAGTCGCATCAGGCAACGGCTGTTCTTCGGCCTTCTTACCTTTATTCTTCTGCTATATAGTAGCCAGACTCCcg        <  2:1297799/100‑1 (MQ=21)
                                                                                              cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcgc       <  2:2485062/100‑1 (MQ=255)
                                                                                              cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcgc       <  2:3739889/100‑1 (MQ=255)
                                                                                                gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTGATTCTGCTGCTCAATAGAAGCCAGAATCCCgcgc     <  1:766922/100‑1 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  <  2:3395804/100‑1 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  <  2:2600360/100‑1 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  >  1:241494/1‑100 (MQ=255)
                                                                                                   ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg  >  2:838322/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGG  >  NC_000913/2662442‑2662640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.