New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2662541NA (NA)16 (0.120) 6/164 NT NA noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 2662574 NA (NA)noncoding (266/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 162 total aligned reads displayed.

ACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACG  >  NC_000913/2662485‑2662672
                                                                                         |                                                                                                  
aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                                                          <  1:1039409/100‑1 (MQ=11)
aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGGAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                                                          <  2:2075008/100‑1 (MQ=11)
   gCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                                                       >  1:456284/1‑100 (MQ=33)
     tatCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGTGTCGCATCAGGCAACGGCTGTTATTCg                                                                                     <  2:2377753/98‑1 (MQ=255)
     ggTCGGATAAGGCGTTCACGCCGCATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                                                     >  2:3679876/2‑100 (MQ=11)
      gTCGGATAAGGCGTTCACGCCGCATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTAgg                                                                                    >  2:2156936/1‑100 (MQ=11)
       tCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGc                                                                                   <  1:2701062/100‑1 (MQ=38)
        cGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGcc                                                                                  <  2:111237/100‑1 (MQ=40)
         ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCt                                                                                 <  1:1043067/100‑1 (MQ=40)
         ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGACCTGATAAGACACATTACACGACGCATCAGGCAACGGCTGTTATTCGGCCt                                                                                 >  1:822576/1‑100 (MQ=14)
          gATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                                                >  2:3799857/1‑100 (MQ=255)
            tGCGGCGTGAACGCCTTATTCGTCCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                                                               <  1:2454385/99‑1 (MQ=255)
            tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt                                                                              <  1:2872953/100‑1 (MQ=255)
            tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt                                                                              <  1:2799546/100‑1 (MQ=255)
            tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACACATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt                                                                              >  1:2228068/1‑100 (MQ=255)
               ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTa                                                                            >  2:1358869/1‑99 (MQ=255)
               ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                                                           >  1:3214081/1‑100 (MQ=255)
                gcgTGAACGCCTTATCCGACTTACTGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                                                          <  2:1096357/100‑1 (MQ=255)
                gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTTTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                                                          <  2:2633920/100‑1 (MQ=255)
                gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                                                          <  2:177727/100‑1 (MQ=255)
                 cgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt                                                                         >  1:2600384/1‑100 (MQ=255)
                  gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt                                                                        <  1:165075/100‑1 (MQ=255)
                   tGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt                                                                       <  2:3275647/100‑1 (MQ=255)
                    gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                                                      >  1:3485684/1‑100 (MQ=255)
                    gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                                                      >  2:1060898/1‑100 (MQ=255)
                    gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                                                      <  1:2512740/100‑1 (MQ=255)
                     aaCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt                                                                     <  2:3304545/100‑1 (MQ=255)
                       cGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGAGAAGACGCATTACGCGCCGCATCAGGCAACGGCTGTTATTCTGCCTTGTTACCTTTATTc                                                                   <  2:1382059/100‑1 (MQ=17)
                       cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt                                                                     >  1:969872/1‑98 (MQ=255)
                       cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                                                   <  1:2820003/100‑1 (MQ=255)
                       cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGACAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                                                   >  1:3178500/1‑100 (MQ=255)
                        gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                                                  <  2:1459195/100‑1 (MQ=255)
                        gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                                                  >  1:3045686/1‑100 (MQ=255)
                          cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                                                <  1:2451767/100‑1 (MQ=255)
                          cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                                                <  1:2790542/100‑1 (MQ=255)
                             aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGTATTACGCGTTGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc                                                             <  1:207596/100‑1 (MQ=255)
                                 gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCaa                                                         <  1:1750712/100‑1 (MQ=255)
                                   ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                                                       >  1:1389729/1‑100 (MQ=255)
                                   ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                                                       >  1:3739244/1‑100 (MQ=255)
                                     tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGAATCAGGCAACGGCTGTTATTCGTCCTTGTTACCTTTATTCTGCTGCTCAATAGa                                                     <  2:1575189/100‑1 (MQ=255)
                                       cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                                                   <  2:3241011/100‑1 (MQ=255)
                                        ggTTCTGTTCTCTGTAGACGTGGGTAGACTCATTACGCTTCGCATCATGCAACGTCTGTTAGTCGGTCTTGTTTCCTTTATTCTGCTGCTTAAt                                                        <  2:40133/94‑1 (MQ=255)
                                        ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                                                  <  1:2678238/100‑1 (MQ=255)
                                         gtttttttCACTTTATGTCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                                                   <  1:1520771/92‑1 (MQ=25)
                                           tCTGTTCACTGTAGGCCTGATAAGACGCATTTCTCTTTGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg                                               <  1:1477481/100‑1 (MQ=25)
                                              gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt                                            >  1:3820503/1‑100 (MQ=255)
                                              gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt                                            >  1:1641352/1‑100 (MQ=255)
                                                 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc                                         >  2:3364055/1‑100 (MQ=255)
                                                 cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc                                         >  1:1896730/1‑100 (MQ=255)
                                                  aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg                                        <  2:3932497/100‑1 (MQ=255)
                                                       aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGTCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAg                                   >  1:1308796/1‑100 (MQ=255)
                                                        ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg                                  >  1:3356972/1‑100 (MQ=255)
                                                        ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg                                  <  2:2600360/100‑1 (MQ=255)
                                                        ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg                                  >  1:241494/1‑100 (MQ=255)
                                                        ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAgg                                  <  2:3395804/100‑1 (MQ=255)
                                                         gCCTGATGCGACGCGTAATGCGTCTTATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGa                                 >  2:481680/1‑100 (MQ=25)
                                                          ccTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGat                                <  2:3045658/100‑1 (MQ=255)
                                                           cTGATGCGACGCGTAATGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata                               >  2:577978/1‑100 (MQ=255)
                                                             gATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATAtt                             >  2:1160527/1‑100 (MQ=255)
                                                             gATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATAtt                             >  2:2191285/1‑100 (MQ=255)
                                                             gATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATAtt                             >  2:1715989/1‑100 (MQ=255)
                                                              aTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTc                            <  2:3407647/100‑1 (MQ=255)
                                                               tAAGCCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTTCTGCTCAATAGAAGCCAGAATCCCGCGCAGGatat                              >  2:722344/1‑97 (MQ=255)
                                                               tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGTCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCa                           <  1:1286405/100‑1 (MQ=255)
                                                                 aGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCTGCCTTGTTACCTTTATTCTACTGCTAAATATAAGCCAGAATCACGCACAAGATATTaaa                          >  1:875586/1‑99 (MQ=25)
                                                                  gACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt                        >  1:1465013/1‑100 (MQ=255)
                                                                    cGCATTTCGCGTCGCATCAGACAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTcc                      >  2:1288989/1‑100 (MQ=255)
                                                                    cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTcc                      >  1:3100018/1‑100 (MQ=255)
                                                                     gCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCt                     >  1:1848445/1‑100 (MQ=255)
                                                                     gCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCt                     <  1:2191304/100‑1 (MQ=255)
                                                                      cATTACGCGTCGCATCAGGCAACGGCTGTTATTCTGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg                    <  1:1370214/100‑1 (MQ=255)
                                                                      cATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGTCAGAATCCCGCGCAGGATATTCAACTCCt                     >  2:2265474/1‑99 (MQ=255)
                                                                      cATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg                    <  2:2008459/100‑1 (MQ=255)
                                                                      cATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg                    <  1:2951978/100‑1 (MQ=255)
                                                                      cATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGACAGAATCCCGCGCAGGATATTCAACTCCTg                    >  1:2481156/1‑100 (MQ=255)
                                                                        ttACGCGTCGCATTAGGCAACGGCTTTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg                    <  1:675037/98‑1 (MQ=255)
                                                                        ttACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGc                  <  1:3193479/100‑1 (MQ=255)
                                                                         tACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCGATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGc                  <  2:5367/99‑1 (MQ=255)
                                                                         tACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCt                 <  1:1250000/100‑1 (MQ=255)
                                                                          aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCtt                >  1:333720/1‑100 (MQ=255)
                                                                          aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCAGCTCAATAGGAGCCACAATCCCGCGCAGGATATTCAACTCCTGGCtt                >  2:2647602/1‑100 (MQ=255)
                                                                             cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGGCAGAATCCCGCGCAGGATATTCAACTCCTGGCtt                >  2:1315204/1‑97 (MQ=255)
                                                                             cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGATTCCCGCGCAGGATATTCAACTCCTGGCtt                <  2:2381588/97‑1 (MQ=255)
                                                                             cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTcc             >  2:1648787/1‑100 (MQ=255)
                                                                              gTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCg            <  1:374163/100‑1 (MQ=255)
                                                                              gTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCg            >  1:726412/1‑100 (MQ=255)
                                                                               tCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCgg           <  2:1885847/100‑1 (MQ=255)
                                                                                cGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCggg          <  2:2445049/100‑1 (MQ=255)
                                                                                 gCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc         >  1:1636967/1‑100 (MQ=255)
                                                                                 gCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAAAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCg            >  1:1803025/1‑97 (MQ=255)
                                                                                  cATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcg        >  1:3254715/1‑100 (MQ=255)
                                                                                  cATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcg        <  2:2485240/100‑1 (MQ=255)
                                                                                   aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc       <  2:3542492/100‑1 (MQ=255)
                                                                                   aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc       <  2:2435556/100‑1 (MQ=255)
                                                                                    tCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgcg      >  2:3138024/1‑100 (MQ=255)
                                                                                    tCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgcg      <  2:3828247/100‑1 (MQ=255)
                                                                                     cAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAACCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgcgc     >  1:538778/1‑100 (MQ=255)
                                                                                       ggCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCAc   >  2:3697618/1‑100 (MQ=255)
                                                                                        gCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACg  >  2:3756554/1‑100 (MQ=255)
                                                                                        gCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACg  <  2:2557031/100‑1 (MQ=255)
                                                                                         |                                                                                                  
ACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACG  >  NC_000913/2662485‑2662672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.