New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3296999 =NA (NA)16 (0.120) 6/164 NT NA noncoding (1/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3297032 = NA (NA)noncoding (34/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 209 total aligned reads displayed.

CGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT  >  NC_000913/3296901‑3297098
                                                                                                  |                                                                                                   
cGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGc                                                                                                    >  2:2037406/1‑100 (MQ=255)
cGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGc                                                                                                    <  1:851381/100‑1 (MQ=255)
cGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGc                                                                                                    <  2:1213262/100‑1 (MQ=255)
cGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTAAAGAGGGTAACAACAACGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGc                                                                                                    >  1:1041316/1‑100 (MQ=255)
  tGAAGCGAAAGCGGCGGCATATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGGTTACGTCTATTAAATAGCAGCCCCTTGTAATGCCt                                                                                                  >  2:1340783/1‑100 (MQ=255)
  attgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCt                                                                                                  <  1:3885747‑M1/4‑1 (MQ=255)
   ttgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTg                                                                                                 <  2:275308‑M1/5‑1 (MQ=255)
   gAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTg                                                                                                 >  1:664823/1‑100 (MQ=255)
    aaGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGa                                                                                                <  1:3353997/100‑1 (MQ=255)
     aGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCAGAt                                                                                               >  1:2984443/1‑100 (MQ=255)
      gCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATg                                                                                              <  1:2840919/100‑1 (MQ=255)
        gAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCg                                                                                            >  1:3777035/1‑100 (MQ=255)
         aaaGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGa                                                                                           <  2:1434260/100‑1 (MQ=255)
         aaaGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTCAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGa                                                                                           <  2:2123382/100‑1 (MQ=255)
            gcggcgGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGc                                                                                        <  2:332374/100‑1 (MQ=255)
                cggcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGc                                                                                    <  1:2173316/100‑1 (MQ=255)
                 ggcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGcc                                                                                   <  2:2909967/100‑1 (MQ=255)
                  gcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCTGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcg                                                                                  <  1:1187615/100‑1 (MQ=255)
                    aGATATTGCCAGCCGGGTGAGCGGCCTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATTGCAGCCCCTTGTAATGCCTGATGCGACGCTTGc                                                                                    <  2:2349914/96‑1 (MQ=255)
                      atatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTc                                                                              <  2:3840103/100‑1 (MQ=255)
                       tatTGCCAGCCGGGTGAGCGGCGTTAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                             <  1:2276063/100‑1 (MQ=255)
                       tatTGCCAGCCGGGTGAGCGGCGTGATGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                             <  1:1082919/100‑1 (MQ=255)
                       tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                             >  1:1709563/1‑100 (MQ=255)
                       tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                             >  1:2363348/1‑100 (MQ=255)
                       tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                             >  2:2234505/1‑100 (MQ=255)
                          tGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                          >  1:2817415/1‑100 (MQ=255)
                           gCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                         >  2:3612098/1‑100 (MQ=255)
                           gCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTAATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGCCTTATc                                                                         >  2:632507/1‑100 (MQ=255)
                            ccAGCCGGGTGAGCGGCGTGAAGCGGGTAACTATGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                        <  1:561042/100‑1 (MQ=255)
                             tgatttgagggaaaacatgtcggatgcggcgtaaacgcctcatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                        >  1:390258‑M1/70‑99 (MQ=255)
                             gatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaatGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                       >  1:3239342‑M1/70‑100 (MQ=255)
                             cAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                       >  2:3669749/1‑100 (MQ=255)
                              aGCCGGGTGAGCGGCGTGAAGCGGGTAATTTCGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                      <  1:1510772/100‑1 (MQ=255)
                               tttgagggaatacatgtcggagtcggcgtaaacgccttatctgacctacggtttgtatcgttgtaatGCCTGATGCGATGCTTGCCGCGTCTTATCAg                                                                       >  2:3180885‑M1/68‑98 (MQ=255)
                               gCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGc                                                                     >  1:920667/1‑100 (MQ=255)
                               atttgaggtaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                     >  2:1900203‑M1/68‑100 (MQ=255)
                               atttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                     >  1:2838074‑M1/68‑100 (MQ=255)
                                tttgaggggaaacatgtcggatgcggtgtgaatgccttgtctgacctagggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                     >  2:3394459‑M1/67‑99 (MQ=255)
                                tttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCTTGATGCGATGCTTGCCGCGTCTTATCAGGc                                                                     >  2:751478‑M1/67‑99 (MQ=255)
                                ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                    <  1:1841131/100‑1 (MQ=255)
                                ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTCACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                    >  1:2756404/1‑100 (MQ=255)
                                   ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                 <  2:1157094/100‑1 (MQ=255)
                                   ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                 >  2:1487680/1‑100 (MQ=255)
                                    gTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                >  2:2629394/1‑100 (MQ=255)
                                      gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                              <  1:3089667/100‑1 (MQ=255)
                                       aGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAAGCCTACAACg                                                             >  1:3172737/1‑100 (MQ=255)
                                        gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATTCGACGCTTGCCGCGTCTTATCAGGCCTACAACGa                                                            >  2:1972465/1‑100 (MQ=255)
                                        gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCCTCTTATCAGGCCTACAACGa                                                            >  1:1796774/1‑100 (MQ=255)
                                        gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCAGCGACTTATCAGACCTACAACGa                                                            >  1:332814/1‑100 (MQ=255)
                                        gcggcgTGAAGCGGGTAACTACGGCGATTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGa                                                            >  1:2388358/1‑100 (MQ=255)
                                         cggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                           <  1:250777/100‑1 (MQ=255)
                                           gcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCCGGCCTACAACGATAc                                                         >  2:3285207/1‑100 (MQ=255)
                                           catgtcggatgcggcgtaaacgccttatttgatttatggtttgtatcgttgtaatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATAc                                                         >  1:185233‑M1/56‑100 (MQ=255)
                                                aaGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAcc                                                    >  1:2428943/1‑100 (MQ=255)
                                                     ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGt                                                  >  2:3073551/1‑97 (MQ=255)
                                                      gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGt                                              >  1:986963/1‑100 (MQ=255)
                                                        aaCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCa                                            <  2:3919661/100‑1 (MQ=255)
                                                          cTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                          >  2:3815868/1‑100 (MQ=255)
                                                           tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGAt                                         >  2:3654118/1‑100 (MQ=255)
                                                           tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGAt                                         >  2:2831377/1‑100 (MQ=255)
                                                            aCGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATa                                        >  1:1395398/1‑100 (MQ=255)
                                                            aCGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATa                                        <  1:1123604/100‑1 (MQ=255)
                                                               gCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGAGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAg                                      <  1:3742828/99‑1 (MQ=255)
                                                                cgtttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGc                                    <  2:2608053/100‑1 (MQ=255)
                                                                 gtttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCg                                   <  1:2036620/100‑1 (MQ=255)
                                                                   ttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGtt                                 <  2:1717900/100‑1 (MQ=255)
                                                                      cgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATGAGGCCTACAACGATACAAACCGTAGGTCTGATAAGGGGTTTAc                              >  2:3931161/1‑100 (MQ=255)
                                                                      cgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAc                              >  1:2567004/1‑100 (MQ=255)
                                                                      cgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAACGTAGGTCAGATAAGGCGTTTAc                              >  2:161719/1‑100 (MQ=255)
                                                                       gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcg                             <  2:1451760/100‑1 (MQ=255)
                                                                        tttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                            >  2:2492204/1‑100 (MQ=255)
                                                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATTCGACGCTTTCTGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                           <  1:3117543/100‑1 (MQ=255)
                                                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                           <  2:2175260/100‑1 (MQ=255)
                                                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                           <  2:2817389/100‑1 (MQ=255)
                                                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                           <  2:3449533/100‑1 (MQ=255)
                                                                          tattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGACTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcac                            >  1:790615/1‑96 (MQ=255)
                                                                           attaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgccgc                         >  1:2627748/1‑100 (MQ=255)
                                                                           attaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGAAAGTCAGATAAGGCGTTTAcgccgc                         >  1:3543450/1‑100 (MQ=255)
                                                                            ttaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCa                        <  2:1071066/100‑1 (MQ=255)
                                                                              aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                      <  1:3446111/100‑1 (MQ=255)
                                                                              aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                      >  1:2829528/1‑100 (MQ=255)
                                                                               aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATcc                     >  2:3113344/1‑100 (MQ=255)
                                                                                aTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAAGGCGTTTACGCCGCATcc                     >  1:2377117/1‑99 (MQ=255)
                                                                                   gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                 >  1:1599251/1‑100 (MQ=255)
                                                                                   gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                 >  1:2920071/1‑100 (MQ=255)
                                                                                    cagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAt                <  2:1760124/100‑1 (MQ=255)
                                                                                      gcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt              <  1:1693937/100‑1 (MQ=255)
                                                                                       ccccTTGTAATGCCTGCTGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCATATAATGCGTTTACGCCGCATACGACATg               <  2:904312/98‑1 (MQ=25)
                                                                                        cccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt              >  2:200100/1‑98 (MQ=255)
                                                                                         ccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCATGCCTATAACGATACAAACCGTAGGTCGGATGCGGCGTAAACGCCGTATCTGAcctacgg            <  1:249073/99‑7 (MQ=18)
                                                                                           ttGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTcc         <  1:2859980/100‑1 (MQ=255)
                                                                                            tGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc        >  1:3618969/1‑100 (MQ=255)
                                                                                             gTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGTCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt       <  1:1950747/100‑1 (MQ=255)
                                                                                             gTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt       <  2:3911641/100‑1 (MQ=255)
                                                                                             gTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt       <  1:3508610/100‑1 (MQ=255)
                                                                                               aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa     >  1:699105/1‑100 (MQ=255)
                                                                                               aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGACTACAACGATACAAACTGTAGGTTAGATATGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa     >  2:1173715/1‑100 (MQ=37)
                                                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa   <  1:760254/100‑1 (MQ=255)
                                                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa   <  1:2773942/100‑1 (MQ=255)
                                                                                                  GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGCTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCACTCaaa   <  1:677956‑M1/99‑1 (MQ=255)
                                                                                                  |                                                                                                   
CGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT  >  NC_000913/3296901‑3297098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.