New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3296999 =NA (NA)16 (0.120) 6/164 NT NA noncoding (1/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3297032 = NA (NA)noncoding (34/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 192 total aligned reads displayed.

CCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCAC  >  NC_000913/3296933‑3297130
                                                                                                   |                                                                                                  
ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                    <  1:1544102/100‑1 (MQ=255)
ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTCACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                    >  1:2756404/1‑100 (MQ=255)
ccGGGGGAGCGGCGTGAAGCGGGTAACTACGGCGGGTACTTTTATTAAATAGCAGCCCCTTTTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                    >  1:1696883/1‑100 (MQ=37)
   ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                                                 >  2:1487680/1‑100 (MQ=255)
    gTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                                >  2:2629394/1‑100 (MQ=255)
    gTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAAGAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                                <  2:3629027/100‑1 (MQ=255)
     tGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaa                                                                                               >  2:1088537/1‑100 (MQ=255)
      gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                                                              <  1:3089667/100‑1 (MQ=255)
      gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                                                              <  2:2880950/100‑1 (MQ=255)
        gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCAGCGACTTATCAGACCTACAACGa                                                                                            >  1:332814/1‑100 (MQ=255)
        gcggcgTGAAGCGGGTAACTACGGCGATTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGa                                                                                            >  1:2388358/1‑100 (MQ=255)
         cggcgTGATGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGAGGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                                                           <  1:2459123/100‑1 (MQ=255)
          ggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATa                                                                                          >  1:2822999/1‑100 (MQ=255)
            cgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATAAGACGATTACCGCATCTTATCAGGCCTACAACGATACa                                                                                        >  1:3216091/1‑100 (MQ=38)
               gAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                     <  2:1452355/100‑1 (MQ=255)
                aaGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAcc                                                                                    >  1:2428943/1‑100 (MQ=255)
                aaGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAcc                                                                                    <  1:3845813/100‑1 (MQ=255)
                  gCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTAATACGACGCTTGCCGCATCTTATCAGGCCTACAACGATACAAACCGt                                                                                  >  1:1084019/1‑100 (MQ=255)
                      gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGt                                                                              >  1:986963/1‑100 (MQ=255)
                        aaCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCa                                                                            <  2:3919661/100‑1 (MQ=255)
                          cTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                                                          >  2:3815868/1‑100 (MQ=255)
                           tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGAt                                                                         >  1:1978011/1‑100 (MQ=255)
                            aCGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATa                                                                        <  1:1123604/100‑1 (MQ=255)
                            aCGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATa                                                                        <  1:3900324/100‑1 (MQ=255)
                             cGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATa                                                                        >  2:3662844/1‑99 (MQ=255)
                               gCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACTGTAGGTCAGATAAgg                                                                     <  1:1825255/100‑1 (MQ=255)
                               gCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAgg                                                                     <  2:1173887/100‑1 (MQ=255)
                               gCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAgg                                                                     <  2:1790261/100‑1 (MQ=255)
                                cgtttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGc                                                                    <  2:2608053/100‑1 (MQ=255)
                                 gtttacgtttaTTAAATAGCAGCCCCTTGTAATGACTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCg                                                                   <  2:2051941/100‑1 (MQ=255)
                                      cgtttaTTAAATAGCAGCCTCTTGTAATGCCTGATGCCCCGCTTGCCGCGTCGTATCAGGTCTACAACGATACAAACCGTAGGTAAGTTAAGGCGTTTa                                                               <  2:1750921/99‑1 (MQ=255)
                                      cgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATGAGGCCTACAACGATACAAACCGTAGGTCTGATAAGGGGTTTAc                                                              >  2:3931161/1‑100 (MQ=255)
                                      cgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAc                                                              >  1:2830232/1‑100 (MQ=255)
                                      atctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcagacCTACAACGATACAAACCGTAAGTCAGATAAGGCGTTTAc                                                              >  1:1619601‑M2/62‑100 (MQ=255)
                                       gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcg                                                             >  2:3550409/1‑100 (MQ=255)
                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATTCGACGCTTTCTGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                           <  1:3117543/100‑1 (MQ=255)
                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                           <  2:2175260/100‑1 (MQ=255)
                                         ttattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                           <  2:2817389/100‑1 (MQ=255)
                                           attaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgccgc                                                         >  1:2627748/1‑100 (MQ=255)
                                           attaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgccgc                                                         >  1:3468769/1‑100 (MQ=255)
                                           attaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGAAAGTCAGATAAGGCGTTTAcgccgc                                                         >  1:3543450/1‑100 (MQ=255)
                                             taAATAGCAGCCCCTTGTAATGCCTAATGCGACACTTGCCGCGTCTTATCAGGTCTACAACGATACATTCCGTAGTTTTGATAAGGCGTTTAAGCAGCAt                                                       <  2:1040830/100‑1 (MQ=25)
                                              aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCAt                                                       >  1:771807/1‑99 (MQ=255)
                                              aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                                                      <  1:3446111/100‑1 (MQ=255)
                                              aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                                                      >  1:2038805/1‑100 (MQ=255)
                                              aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                                                      >  1:2838983/1‑100 (MQ=255)
                                               aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATcc                                                     >  2:3113344/1‑100 (MQ=255)
                                                aTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCg                                                    <  1:2492227/100‑1 (MQ=255)
                                                aTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAAGGCGTTTACGCCGCATcc                                                     >  1:2377117/1‑99 (MQ=255)
                                                 tAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGa                                                   >  2:1161596/1‑100 (MQ=255)
                                                   gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                                                 >  1:1599251/1‑100 (MQ=255)
                                                   gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                                                 <  2:3442608/100‑1 (MQ=255)
                                                   gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                                                 <  1:3113374/100‑1 (MQ=255)
                                                   gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                                                 >  1:2920071/1‑100 (MQ=255)
                                                     gtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcaTTACAACGATACAAACCATAAATCAAATAAGGCGTTTACGCCGCATCCGACATg                                               >  1:185233‑M2/47‑100 (MQ=255)
                                                     agcCCCTTGTAATGCCTGATGCGACGTTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATg                                               <  1:3672669/100‑1 (MQ=255)
                                                      tatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcaTTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt                                              >  2:1291073‑M2/46‑100 (MQ=255)
                                                        cccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt                                              >  2:200100/1‑98 (MQ=255)
                                                           ttGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTcc                                         <  2:925186/100‑1 (MQ=255)
                                                           ttGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCAACATGtttt                                           >  1:1937898/1‑98 (MQ=255)
                                                            tGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc                                        <  2:1709548/100‑1 (MQ=255)
                                                             gTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGTCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt                                       <  1:1950747/100‑1 (MQ=255)
                                                             gTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt                                       <  2:3911641/100‑1 (MQ=255)
                                                             gTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt                                       <  1:3513453/100‑1 (MQ=255)
                                                              tAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTc                                      <  2:2374259/100‑1 (MQ=255)
                                                               aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa                                     >  1:2295607/1‑100 (MQ=255)
                                                               aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa                                     >  1:699105/1‑100 (MQ=255)
                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                   <  1:2773777/100‑1 (MQ=255)
                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                   <  1:2773942/100‑1 (MQ=255)
                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                   <  1:760254/100‑1 (MQ=255)
                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                   >  1:139655/1‑100 (MQ=255)
                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                   <  2:1917945/100‑1 (MQ=255)
                                                                  gcctgataagacgcggcaagcgtcgcatcaggcCTACAACGATACAAACCCTAGGTCAGACAAGGCATTCACACCGCATCCGACATGTTTCCCCTCaaa                                   >  2:3394459‑M2/34‑99 (MQ=255)
                                                                  gcctgataagacgcggcaaccgtcgcatcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGGTTACGCCGCCTCCGACATGTTTTCCCTCAAAt                                  >  2:961096‑M2/34‑100 (MQ=255)
                                                                  gcctgataagacacggcaagcgtcgcatcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                   >  1:2572922‑M2/34‑99 (MQ=255)
                                                                  GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAt                                  >  2:2232270‑M1/1‑100 (MQ=255)
                                                                  GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGCTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCACTCaaa                                   <  1:677956‑M1/99‑1 (MQ=255)
                                                                   ctgataagacgcggcaagcatcgcatcaggcaTTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGACTCCGACATGTATTCCCTCaaa                                   >  2:3180885‑M2/33‑98 (MQ=255)
                                                                   CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATc                                 >  1:3907209‑M1/1‑100 (MQ=255)
                                                                   CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATc                                 >  1:736717‑M1/1‑100 (MQ=255)
                                                                    ctgataagacgcggcaagcgtcgcatcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCa                                >  2:818298‑M2/32‑100 (MQ=255)
                                                                     tgataagacgcggcaagcgtcgcatcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAg                               >  1:3751329‑M2/31‑100 (MQ=255)
                                                                      GATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                              >  1:3577281‑M1/1‑100 (MQ=255)
                                                                      GATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                              <  1:904811‑M1/100‑1 (MQ=255)
                                                                       ATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaa                             >  1:793198‑M1/1‑100 (MQ=255)
                                                                         gCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                              <  2:515397/97‑1 (MQ=255)
                                                                           gACGCTTGCCGCGTCTTATCAGGCCGACAACGATACATACCGTAGGTGAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaaca                           <  2:1418259/98‑1 (MQ=255)
                                                                               cTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAgcg                     <  2:1395383/100‑1 (MQ=255)
                                                                                 tGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGcc                   <  2:1849031/100‑1 (MQ=255)
                                                                                  gCCGCGTCTTATCAGGCCTACAACGATACAACCCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGcc                   <  2:322826/99‑1 (MQ=255)
                                                                                  gCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCACATCCGACAAGAATTCCCACAAATCAGAACAACAGCGCCa                  >  1:2535365/1‑100 (MQ=25)
                                                                                   ccGCGTCTTATCAGGACTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAg                 <  1:3864810/100‑1 (MQ=255)
                                                                                    cgcgTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGc                >  2:1382327/1‑100 (MQ=255)
                                                                                        tCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGCTTACGCCCCATCCAACATGTTTTCACTCAAATCAGAACAACAGCGCCAGCccg             >  1:178641/1‑99 (MQ=38)
                                                                                         cTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCccgcc           <  1:845172/100‑1 (MQ=255)
                                                                                           tATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGa         >  2:128496/1‑100 (MQ=255)
                                                                                           tATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGa         >  1:3269491/1‑100 (MQ=255)
                                                                                            atcaggcCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAc        >  2:2723455‑M2/8‑100 (MQ=255)
                                                                                              cAGGCCTACAACGATACACACCGTAGGTCAAATAAGGCGTTTCCGCCGAATCCGACAAGGTTTCCCACAAATCATAACAACAGCGCCAGCCCGCCGa         >  2:3318437/1‑97 (MQ=255)
                                                                                                  cCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATcac  >  1:18483‑M2/2‑100 (MQ=255)
                                                                                                   |                                                                                                  
CCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCAC  >  NC_000913/3296933‑3297130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.