| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3941521 | 18 (0.130) | 14 (0.110) | 6/168 | NT | 45.2% | intergenic (‑194/‑287) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3941548 | NA (NA) | intergenic (‑221/‑260) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon | |||||
CATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCG > NC_000913/3941422‑3941620 | caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC < 1:1414856‑M1/100‑1 (MQ=255)caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC > 2:658033‑M1/1‑100 (MQ=255) aaCTGGGCTTTTTCTGAAAAAATTCGCGGGCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCTCAATAACTCCCTATACTGCGCCACCAGGGaca < 2:950700/97‑1 (MQ=14) aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAATATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg < 1:1040004/100‑1 (MQ=255) aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg > 2:3772281/1‑100 (MQ=255) aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg > 1:3606768/1‑100 (MQ=255) cGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa > 2:608880/1‑100 (MQ=255) gggCTTTTGTTGAAAAAATGCTCGTTTAGTAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca < 1:3249305/100‑1 (MQ=14) gCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 2:249023/100‑1 (MQ=40) gCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 1:701650/100‑1 (MQ=40) cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg < 2:3532377/100‑1 (MQ=40) ttttGCTTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg < 1:882344/99‑1 (MQ=18) ttttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg < 1:2935369/100‑1 (MQ=38) ttttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg > 2:1360695/1‑100 (MQ=38) tgtgatGAAAAAATGCGCGGTCAGAATATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc < 1:3844842/95‑1 (MQ=9) tGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaa > 2:712534/1‑100 (MQ=35) tGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaa > 2:3177797/1‑100 (MQ=35) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 1:3818766/100‑1 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 1:330909/1‑100 (MQ=32) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCACTATAATGCGCCACCACTGACACGGAACAACGGCAAaca > 1:1236549/1‑100 (MQ=14) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:388281/1‑100 (MQ=11) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:564320/1‑100 (MQ=11) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:681976/1‑100 (MQ=11) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGACACCACTGACACGGAACAACGGCAAacac > 1:1466655/1‑100 (MQ=11) gTCAGAAAATTATTTTAAATTTCCTCTTGGCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcag < 2:616868‑M1/100‑33 (MQ=255) gTCAGAAAATTATGTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcag < 1:2271784‑M1/100‑33 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 1:3076820‑M1/100‑34 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 1:3803499‑M1/100‑34 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:1187834‑M1/100‑35 (MQ=255) aGAAAATTATTTTAAATTTCTTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtgg < 1:3571335‑M1/100‑36 (MQ=255) aGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGACTAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtgg < 2:2671820‑M1/100‑36 (MQ=255) aGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtgg < 1:3887900‑M1/100‑36 (MQ=255) aaaaTTATTTTAAATTTCCTCTTGTCATGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtg < 1:350707‑M1/100‑38 (MQ=255) aaaaTTATTTTAAATTGCCTTTTGTCAGGTCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:2681855‑M1/97‑35 (MQ=255) aaaTTATTTTAGATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCGCTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:3540018‑M1/100‑39 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGTCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:685579‑M1/100‑39 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCGCTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:3540033‑M1/100‑39 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 2:733218‑M1/100‑39 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgac > 2:3043067‑M1/1‑5 (MQ=255) tGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagtgagttattccggcctgacaagaggaaatttaaaataattttctgacc < 1:3268616‑M1/100‑97 (MQ=255) gACccggcggcgtgtttgccgttgttccttgtcattggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 1:1473369‑M1/100‑98 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttacaataattttctgacc > 2:1017743‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 2:3766557‑M1/100‑98 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 1:1845293‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 1:2482424‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 2:34343‑M1/1‑3 (MQ=255) gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg > 1:736045/1‑100 (MQ=31) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:474366‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:1463788‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:2548810‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:3785306‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 2:544397‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:2548415‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:1921749‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:1882377‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcatgatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:1110433‑M1/1‑1 (MQ=255) cacGGAACAACTGCAAACACGCCGTGGGGGCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg < 1:3513773/100‑1 (MQ=11) cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg > 2:3705097/1‑100 (MQ=33) | CATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCG > NC_000913/3941422‑3941620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |