| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3941521 | 18 (0.130) | 14 (0.110) | 6/168 | NT | 45.2% | intergenic (‑194/‑287) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3941548 | NA (NA) | intergenic (‑221/‑260) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon | |||||
GACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGA > NC_000913/3941519‑3941647 | gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg > 1:736045/1‑100 (MQ=31) cacGGAACAACTGCAAACACGCCGTGGGGGCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg < 1:3513773/100‑1 (MQ=11) cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg > 2:3705097/1‑100 (MQ=33) acGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg < 2:3296998/99‑1 (MQ=32) acGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGt > 2:1107171/1‑100 (MQ=33) acGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGt > 1:651772/1‑100 (MQ=33) cGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGta < 1:3772320/100‑1 (MQ=33) ggAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtat < 1:3656562/100‑1 (MQ=33) ggAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtat < 1:3274428/100‑1 (MQ=33) gAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtatt < 1:1226760/100‑1 (MQ=33) gAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtatt < 1:1870263/100‑1 (MQ=33) aacaacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtatta < 2:2717792/100‑1 (MQ=33) cgatctgCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtattat < 2:2379272/94‑1 (MQ=16) acaacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtattat < 1:1604414/100‑1 (MQ=33) acaacGGCAAACACGCCGCCGGGTAAGCGGGGATCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtattat > 2:3300468/1‑100 (MQ=12) acaacGGCAAACAAAACGCCGGGTCAGCGAGGCAATCATGAAAACTCCGGCAGAGAGCGCAAAAAGAACTGCGTGAGTCTGTAGCGGGAAAAAGtatta > 2:2270981/1‑99 (MQ=2) caacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATTAATGCTTGACTCTGTAGCGGGAAAGCGTATTATg > 2:2903066/1‑100 (MQ=18) caacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATg > 1:1287543/1‑100 (MQ=33) aacGGCAAACACGCCGCCGGGTCAGCGAGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCATATTATGc < 2:1172139/100‑1 (MQ=255) acGGCAAACACGCCGCCGGGTCAGCGGTGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca < 1:637545/100‑1 (MQ=18) acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca > 2:701371/1‑100 (MQ=32) acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca < 2:1502246/100‑1 (MQ=33) acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca > 1:3871496/1‑100 (MQ=33) acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca > 1:1878545/1‑100 (MQ=32) cGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcac > 1:517321/1‑100 (MQ=33) ggCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcaca > 2:3075336/1‑100 (MQ=33) ggCAAACAAGACGCAAGGTCAGCGGTGTCTTCCTGAGTACTCCGTCAGAGAAAGCAAAAATAAATGCTTGACTCTGTGGTGTGAAAGCGTATTATGgaca < 2:1051368/100‑1 (MQ=2) gCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtattatagatcg > 1:2379294/1‑94 (MQ=16) gCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCacac > 1:2973381/1‑100 (MQ=33) cAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTATGTAGCGGGAAAACGTATTATGcaca > 1:802571/1‑98 (MQ=16) aaaCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCAGTAGCGGGAAAGCGTATTATGCACAcc > 1:1588276/1‑99 (MQ=18) aaCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACAcccc > 1:1125130/1‑100 (MQ=33) aaCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACAcccc < 2:1150868/100‑1 (MQ=32) cacGCCGCCGGGTCAGCGGGGTTCTCCTTAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc < 1:649459/100‑1 (MQ=18) cacGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc > 1:3456771/1‑100 (MQ=33) acGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgcg > 2:1317024/1‑100 (MQ=33) cgccgcCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTTTAGCAGGAAAGCATATAATACACACCCcgc > 1:1636678/1‑98 (MQ=11) cgccgcCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc > 2:2193511/1‑100 (MQ=32) cgccgcCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACACTGTAGCGGGAAAGCGTATTATGCACACCCAgcgc > 1:925398/1‑100 (MQ=12) cgccgcCGGGTCAGCGGGGTTATCCTGAGAACTAAGGCAGAGAAAGAAAAAATAAATTCTTGACTCTCTAGCGGGAAAGCGTATTATGCACACCCagcac > 2:2742395/1‑98 (MQ=11) gccgccGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgcc < 2:2163722/100‑1 (MQ=33) gccgccGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgcc < 1:3705136/100‑1 (MQ=33) gccgccGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgcc > 2:3071666/1‑100 (MQ=32) gccgccGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgcc > 1:2163741/1‑100 (MQ=33) gccgccGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCAGTAGCGGGAAAGCGTATTATGCACACCCCGcgcc > 1:2289185/1‑100 (MQ=17) ccgccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccg > 1:2751378/1‑100 (MQ=33) gccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCt < 2:3456732/100‑1 (MQ=33) cgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCt > 2:3469929/1‑98 (MQ=32) gggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgan < 1:2570781/100‑2 (MQ=17) ggTCAGCGGGGTTCTCCTGAGAACTGCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCTTATTATGCACACCCCGCGCCGCTgaga < 2:2925446/100‑1 (MQ=12) ggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga > 2:3301946/1‑100 (MQ=33) ggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga < 1:733709/100‑1 (MQ=32) | GACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGA > NC_000913/3941519‑3941647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |