New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3943467 =	NA (NA)	36 (0.280)	12/166	NT	48.5%	noncoding (33/76 nt)	gltU	tRNA‑Glu
	?	NC_000913	3943474 =	41 (0.290)					noncoding (40/76 nt)	gltU	tRNA‑Glu

TGCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATC  >  NC_000913/3943368‑3943495                                                                                                    |                             tGCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGccc                              >  2:836706/1‑100 (MQ=32) tGCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGccc                              <  1:3733982/100‑1 (MQ=32) tGCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGAAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGccc                              >  1:993628/1‑100 (MQ=17)  gCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCt                             <  2:2150126/100‑1 (MQ=33)  gCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCt                             >  1:1534892/1‑100 (MQ=33)  gCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCt                             >  1:1636159/1‑100 (MQ=33)  gCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCt                             <  2:3311127/100‑1 (MQ=32)   cAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCtt                            >  2:1087657/1‑100 (MQ=33)   cAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACATCCCCTTCGTCTAGAGGCCCAGGACACCGccc                              >  2:1586889/1‑98 (MQ=17)   cAGTGATCACCCAGATTGTATGATCGGAAGTGAACAGAAAGGCGTCTTGCGCAGCCGACTGATACGTCCCCTTCGTCTCGAGGCGCAGGTCACCGCCCtt                            <  2:320827/100‑1 (MQ=11)        cTCACACAGATTGTCTGATAGGAATTGAATAGCAAGTCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcg                       <  1:133008/100‑1 (MQ=255)        cTCACACAGATTGTCTGATAGGAAGTGAAAAGCAGGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTc                          <  2:2298487/97‑1 (MQ=17)          cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc                     <  2:3629128/100‑1 (MQ=32)          cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc                     >  1:3851465/1‑100 (MQ=33)          cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc                     >  1:496538/1‑100 (MQ=33)          cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc                     >  2:1737763/1‑100 (MQ=33)          cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc                     >  2:1741811/1‑100 (MQ=32)          cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGAAGACTGATACGTCCACTTCGTCTATAGGCCCAGGACACCGCCCTTTCAcggc                     >  2:866720/1‑100 (MQ=255)          cacacaGATTGTCTGATAGGAAGTGAAAAGAAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcgg                      >  2:2812846/1‑99 (MQ=17)            ctcaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggctg                   <  1:2647021/98‑3 (MQ=18)            cacaGTTTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc                     <  1:2928317/98‑1 (MQ=17)            cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg                   <  2:2982956/100‑1 (MQ=33)            cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg                   <  1:214432/100‑1 (MQ=32)            cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg                   >  1:3879989/1‑100 (MQ=33)            cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg                   >  1:3880051/1‑100 (MQ=33)            cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTATTGCGAAGCAGATTGATACGTCCCATTCGTCTAGAGTCCCATGACACCGCCCTTTCAcggc                     >  2:3058051/1‑98 (MQ=11)             acaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGt                  <  2:1960804/100‑1 (MQ=33)              caGTTTGTCTGGTAGGAAGTGAAAAGCTAGGCGTCTTGCGAATTAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTa                 <  1:3276411/100‑1 (MQ=11)              caGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcggag                 >  2:2646997/1‑98 (MQ=18)              caGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTa                 <  2:3378477/100‑1 (MQ=33)              caGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTa                 <  2:981841/100‑1 (MQ=33)                 aTTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACa              >  2:2360608/1‑100 (MQ=33)                  ttGTCTGATAGGAAGTGAAAAGCAATGCGTCTTGCGAAGCAGACCGATACGTCCTCTTCGTCTAGAGGCTCAGGACACCGCCCTTTCACGGCGATAACAg             <  2:371430/100‑1 (MQ=11)                  ttGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCTCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAg             <  2:1723738/100‑1 (MQ=18)                  ttGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAg             <  2:2538299/100‑1 (MQ=32)                   tGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAg             >  1:2897349/1‑99 (MQ=33)                    gTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAggg           <  2:2240534/100‑1 (MQ=33)                     tCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAgggg          >  2:728062/1‑100 (MQ=32)                      cTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGGCTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGt         >  1:319083/1‑100 (MQ=18)                      cTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAAAGACCCAGAACACCAAACTTTCACGGCGGTAACAGGAGt         >  1:144520/1‑100 (MQ=11)                      cTGATAGGAAGTGAAAAGCAAAGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAAGACACCGCCCTTTCACGGCGGTAACAgggga         >  2:2151796/1‑99 (MQ=12)                       tGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGtt        <  2:2856893/100‑1 (MQ=32)                        gATAGGAAGTGAATAGCAAGGCGTCTTGCGAAGCAGACTGATACGTACCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc       <  1:3532153/100‑1 (MQ=12)                        gATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGtt        >  2:2340334/1‑99 (MQ=33)                        gATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc       <  1:2868082/100‑1 (MQ=32)                         aTAGGAAGTGGAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  2:542240/100‑1 (MQ=18)                         aTAGGAAGTGAAAAGCAAGTCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  1:3797045/100‑1 (MQ=17)                         aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTaagatcggaaga      >  1:2441108/1‑90 (MQ=255)                         aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTaagatcggaaga      >  1:3345351/1‑90 (MQ=255)                         aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  2:994778/100‑1 (MQ=33)                         aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  2:2436084/100‑1 (MQ=33)                         aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  1:1441317/100‑1 (MQ=33)                         aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  2:1790851/100‑1 (MQ=33)                          tAGGAAGTGAAAAGTAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg      <  1:1517193/99‑1 (MQ=17)                          tAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGa     >  1:3427435/1‑100 (MQ=32)                          tAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGa     >  1:2349261/1‑100 (MQ=32)                          tAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGa     >  2:3334675/1‑100 (MQ=32)                           aGGAATTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGACCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGaa    >  2:1721052/1‑100 (MQ=12)                           aGGAAGTGAAAAGCAAGGCGTCTTGCGAATCAGACTGATACGTCCCCTTCGTCTAAAGGACCAGGACACCGCCCTTTCACGGCGGGAACAGGGGTTCGaa    >  1:2126036/1‑100 (MQ=11)                           aGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCATGGCGGTAACAGGGGTTCGaa    <  2:3567162/100‑1 (MQ=17)                           aGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGaa    >  2:3155147/1‑100 (MQ=32)                           aGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCACAGGACACCGCCCCTTCACGGCGGTAACAGGGGTTCGaa    >  2:3388084/1‑100 (MQ=12)                            ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAt   >  1:3751972/1‑100 (MQ=31)                            ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAt   >  2:637374/1‑100 (MQ=31)                             gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATc  <  2:2908299/100‑1 (MQ=11)                             gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATc  >  1:3101504/1‑100 (MQ=11)                             gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATc  >  1:2135976/1‑100 (MQ=11)                             gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATc  >  1:1332587/1‑100 (MQ=11)                                                                                                    |                             TGCAGTGCTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATC  >  NC_000913/3943368‑3943495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.