New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4235376 =NA (NA)9 (0.070) 5/156 NT NA coding (1619/1650 nt) pgi glucosephosphate isomerase
?NC_000913 4235411 = NA (NA)intergenic (+4/‑495) pgi/yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein

Only 100 of 265 total aligned reads displayed.

AGTGGGGCGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGC  >  NC_000913/4235277‑4235475
                                                                                                   |                                                                                                   
cggcatcgacctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgat                                                                                                     >  2:3606062‑M1/100‑100 (MQ=255)
cggcatcgacctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgat                                                                                                     >  1:3792002‑M1/100‑100 (MQ=255)
   ggggCGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGAt                                                                                                  >  2:3809514/1‑100 (MQ=255)
   ggggCGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGAt                                                                                                  <  2:2989649/100‑1 (MQ=255)
   ggggCGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGAt                                                                                                  >  1:491044/1‑100 (MQ=255)
      gtgTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCATAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGAtt                                                                                                 <  1:1451097/96‑1 (MQ=255)
      gCGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTaa                                                                                               >  2:567148/1‑100 (MQ=255)
       gacctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAAc                                                                                              <  1:3350066‑M1/8‑1 (MQ=255)
       cGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAAc                                                                                              <  1:2447889/100‑1 (MQ=255)
        acctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAAcc                                                                                             >  2:636345‑M1/92‑100 (MQ=255)
         tGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCAACGATAGCTCGACCAATGGTCTGATTAACCg                                                                                            >  1:10539/1‑100 (MQ=255)
          ctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGc                                                                                           >  1:921224‑M1/90‑100 (MQ=255)
             aCTGGGTAAACAGCTGGCGAACCGTATTCTGCCATAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat                                                                                        <  1:2055651/100‑1 (MQ=255)
              cTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtata                                                                                       <  1:1925306/100‑1 (MQ=255)
                gggTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATaaa                                                                                     >  1:962555/1‑100 (MQ=255)
                 cctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttattcggcctacatatcgacgaTGattatcc                                                                                             <  2:2897112‑M1/9‑4 (MQ=255)
                  gTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGc                                                                                   >  1:717360/1‑100 (MQ=255)
                   ttaaCAGCTGGCGGACCGTATTCTGCCAGAGCTGAAAGATGAGAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAg                                                                                    >  1:2652288/3‑98 (MQ=255)
                           tGGCGAACCGTATTCTGCCAGAGCTGAAATATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCgg                                                                          <  1:1582848/100‑1 (MQ=255)
                            ggCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGcagatcggaag                                                                         >  2:739581/1‑90 (MQ=255)
                              cGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTa                                                                       >  1:2719554/1‑100 (MQ=255)
                              cGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTATAATTAACCACTATAAAGCGAGGCGCGGTTa                                                                       >  1:1306048/1‑100 (MQ=255)
                               accgcgtcgcatcgggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTaa                                                                      >  1:677626‑M1/69‑100 (MQ=255)
                                aaCCGTATTCTGCCAGGGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAat                                                                     <  2:2465329/100‑1 (MQ=255)
                                aaCCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAat                                                                     <  1:2263636/100‑1 (MQ=255)
                                 aCCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatc                                                                    <  2:1364633/100‑1 (MQ=255)
                                 aCCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatc                                                                    <  2:1044084/100‑1 (MQ=255)
                                  ccGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatca                                                                   >  1:2096062/1‑100 (MQ=255)
                                    gtcgcatcaggcatcggttgccggattctgtgtgaatgccttatccggcttacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                 >  1:1109624‑M1/64‑100 (MQ=255)
                                     tATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAAATGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcg                                                                >  2:1746102/1‑100 (MQ=255)
                                        tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg                                                             >  1:3318461/1‑100 (MQ=255)
                                        tCTGCCAGAGCTGAAAGATGATAAAGAAATAAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg                                                             >  2:2521608/1‑100 (MQ=255)
                                         cTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGa                                                            >  2:21414/1‑100 (MQ=255)
                                         cTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGa                                                            <  1:1738912/100‑1 (MQ=255)
                                         cTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAAAAAAAATAAAGCGTGGCGCGGTTAATCATCGTCGa                                                            >  1:1178493/1‑100 (MQ=255)
                                           gCCAGAGCTGAAAGATTATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                          <  1:3885969/100‑1 (MQ=255)
                                           gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCAGGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                          <  2:1477951/100‑1 (MQ=255)
                                           gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                          <  1:3437086/100‑1 (MQ=255)
                                           gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                          <  1:3716286/100‑1 (MQ=255)
                                           gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                          >  1:2550756/1‑100 (MQ=255)
                                            ccAGAGCTGAAAGATGATAAAGAAATCAGTAGCTACTATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGatat                                                         <  1:1983770/100‑1 (MQ=255)
                                            ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATCGCTCGACCAATGGTCTGATTAACCGATATAAAGCGTGGCGCGGTTAATCATAGTCGata                                                          >  1:3800381/1‑99 (MQ=255)
                                            ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGatat                                                         >  1:141147/1‑100 (MQ=255)
                                             cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                          >  1:3061697/1‑98 (MQ=255)
                                                agCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAg                                                     >  2:1388046/1‑100 (MQ=255)
                                                  cTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGc                                                   >  2:1027636/1‑100 (MQ=255)
                                                   tGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGcc                                                  >  2:208035/1‑100 (MQ=255)
                                                    gAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCg                                                 >  1:3162671/1‑100 (MQ=255)
                                                     aaaGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg                                                <  1:3826111/100‑1 (MQ=255)
                                                      aaGATGATAAAGAAATCAGCAGCCACTATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa                                               <  1:1027647/100‑1 (MQ=255)
                                                      aaGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa                                               >  1:1326004/1‑100 (MQ=255)
                                                      aaGATGATAAAGAAATCAGCAGACACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCg                                                 >  2:634734/1‑98 (MQ=255)
                                                         atgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATaa                                            >  2:83352/1‑100 (MQ=255)
                                                          tgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAg                                           <  2:2619896/100‑1 (MQ=255)
                                                          tgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAg                                           >  2:1005735/1‑100 (MQ=255)
                                                          tgatAAAGAAATCAGCAAATACGATAGCTCGACAAATGTTCTGATTAACCGCTATAAAGCGTGACGCGGTTAATTATCGTTGATATGTAGGCCGTAAAAg                                           >  2:2381636/1‑100 (MQ=255)
                                                           gatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAgg                                          >  1:600259/1‑100 (MQ=255)
                                                             tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                        >  1:1640762/1‑100 (MQ=255)
                                                             tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                        >  2:1475942/1‑100 (MQ=255)
                                                             tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                        >  1:2487045/1‑100 (MQ=255)
                                                             tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                        >  2:1315045/1‑100 (MQ=255)
                                                             tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                        >  2:3178405/1‑100 (MQ=255)
                                                             tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGAAAAGGCg                                        >  2:2563690/1‑100 (MQ=255)
                                                              aaaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGt                                       <  2:3275908/100‑1 (MQ=255)
                                                              aaaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGt                                       <  1:877953/100‑1 (MQ=255)
                                                               aaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGtt                                      >  2:1238054/1‑100 (MQ=255)
                                                               aaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGtt                                      <  1:575019/100‑1 (MQ=255)
                                                               aaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGtt                                      <  1:1476194/100‑1 (MQ=255)
                                                                ataaaTCAGCAGCTACGATAGCTCGACCAATGTTCTGATTAACCGCTATAAATCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc                                     <  2:469909/98‑1 (MQ=255)
                                                                aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc                                     >  1:3632229/1‑100 (MQ=255)
                                                                aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAACGTCGATATGTAGGCCGGATAAGGCGTTc                                     >  1:2111286/1‑100 (MQ=255)
                                                                 gAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCa                                    <  2:88389/100‑1 (MQ=255)
                                                                  aaaTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAc                                   >  1:275476/1‑100 (MQ=255)
                                                                   aaTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcg                                  <  2:1265537/100‑1 (MQ=255)
                                                                   aaTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcg                                  <  2:47262/100‑1 (MQ=255)
                                                                   aaTCAGCAGCCACGATAACTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcg                                  >  2:819363/1‑100 (MQ=255)
                                                                   aaTCAGCAACCACGATAGCTAGACCAATGGTATGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAc                                   >  2:1266370/1‑99 (MQ=255)
                                                                           gcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATcc                          <  1:1238068/100‑1 (MQ=255)
                                                                           gcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATcc                          >  2:3389242/1‑100 (MQ=255)
                                                                           gcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATcc                          <  2:3297369/100‑1 (MQ=255)
                                                                             cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                        >  2:3852342/1‑100 (MQ=255)
                                                                             cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAAGCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                        <  2:1919225/100‑1 (MQ=255)
                                                                              aCGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                       <  1:3586481/100‑1 (MQ=37)
                                                                              aCGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                       <  1:858483/100‑1 (MQ=255)
                                                                              aCGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                       <  1:2903740/100‑1 (MQ=255)
                                                                                gATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                     <  2:3493929/100‑1 (MQ=255)
                                                                                   aGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGATAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCg                  >  2:3033016/1‑100 (MQ=255)
                                                                                    ggtCGACTAATGGTCTGATTAACCGCTATAAAGCGTGGCGGGGTTAATCATCGTCGATATGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAcc                   <  2:2691667/96‑1 (MQ=38)
                                                                                    gCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGa                 >  2:3562638/1‑100 (MQ=255)
                                                                                     cTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGAt                >  1:3136761/1‑100 (MQ=255)
                                                                                      tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATg               <  1:2016970/100‑1 (MQ=255)
                                                                                      tCGACCAATGATCTGAAAAAAAGCTATAAAGCGTGGCGCGGATAATCATCATCAAAATGTAGGCAGGAAAAGACGTTCACGCACCATACAACAACCGa                 >  2:1134211/1‑98 (MQ=255)
                                                                                        gACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGcc             <  1:78847/100‑1 (MQ=255)
                                                                                        gACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGcc             <  2:3676165/100‑1 (MQ=255)
                                                                                            aaTGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGag         >  1:838401/1‑99 (MQ=255)
                                                                                              tGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCTATATGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGc       <  1:3275141/100‑1 (MQ=255)
                                                                                                gTCTGCTTAACCGATATAAAGCGTGGCGCGGGTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCTATGCCTGAttc       >  2:2680649/1‑96 (MQ=25)
                                                                                                 tCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAc    <  2:419378/100‑1 (MQ=255)
                                                                                                  cTGATTAACCGCTATAAAGCATGGCGAGGTTAATCATAGTCGATATGTCAGCGGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg   >  2:1810149/1‑100 (MQ=25)
                                                                                                   TGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgc  <  2:3429953‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGTGGGGCGTGGAACTGGGTAAACAGCTGGCGAACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGC  >  NC_000913/4235277‑4235475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.