BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4235376 =	NA (NA)	9 (0.070)	5/156	NT	NA	coding (1619/1650 nt)	pgi	glucosephosphate isomerase
*	?	NC_000913	4235411 =	NA (NA)	9 (0.070)	5/156	NT	NA	intergenic (+4/‑495)	pgi/yjbE	glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein

Only 100 of 261 total aligned reads displayed.

CGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA  >  NC_000913/4235312‑4235510

cgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcat                                                                                                     >  1:829934‑M1/65‑100 (MQ=255)

 gtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    >  2:3031832‑M1/64‑100 (MQ=255)

 gtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    >  2:574430‑M1/64‑100 (MQ=255)

 gTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    <  2:635682/100‑1 (MQ=255)

  tcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatccacgaTGATTAACCGCTATAAAGCGTGGCCCGGTtaatcatgg                                                                                                   >  1:2653255‑M1/63‑98 (MQ=255)

  tATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAAATGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcg                                                                                                   >  2:1746102/1‑100 (MQ=255)

     tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg                                                                                                <  2:2582394/100‑1 (MQ=255)

     tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg                                                                                                <  2:1353062/100‑1 (MQ=255)

     tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg                                                                                                <  2:654704/100‑1 (MQ=255)

        gCCAGAGCTGAAAGATTATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                                                             <  1:3885969/100‑1 (MQ=255)

        gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                                                             >  1:581998/1‑100 (MQ=255)

          cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATg                                                                                           <  1:1490370/100‑1 (MQ=255)

          cAGAGCTCAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATg                                                                                           >  2:2043027/1‑100 (MQ=255)

              gCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAgg                                                                                       <  1:2948644/100‑1 (MQ=255)

                  aaaTATGATTAAGAAATCAGTATCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg                                                                                   <  1:1779586/100‑1 (MQ=255)

                  aaaGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg                                                                                   <  1:3826111/100‑1 (MQ=255)

                   aaGATGATAAAGAAATCAGCAGCCACTATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa                                                                                  <  1:1027647/100‑1 (MQ=255)

                   aaGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa                                                                                  <  2:143552/100‑1 (MQ=255)

                    aGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGAt                                                                                 <  1:2739316/100‑1 (MQ=255)

                      atgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATaa                                                                               >  2:83352/1‑100 (MQ=255)

                       tgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAg                                                                              <  2:2619896/100‑1 (MQ=255)

                       tgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAg                                                                              <  1:310147/100‑1 (MQ=255)

                       tgatAAAGAAATCAGCAAATACGATAGCTCGACAAATGTTCTGATTAACCGCTATAAAGCGTGACGCGGTTAATTATCGTTGATATGTAGGCCGTAAAAg                                                                              >  2:2381636/1‑100 (MQ=255)

                        gatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAgg                                                                             >  1:1682716/1‑100 (MQ=255)

                        gatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAgg                                                                             >  1:600259/1‑100 (MQ=255)

                          tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                                                           >  2:1476179/1‑100 (MQ=255)

                          tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                                                           <  1:119195/100‑1 (MQ=255)

                           aaaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGt                                                                          <  2:3275908/100‑1 (MQ=255)

                            aaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGtt                                                                         >  1:1419456/1‑100 (MQ=255)

                             ataaaTCAGCAGCTACGATAGCTCGACCAATGTTCTGATTAACCGCTATAAATCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc                                                                        <  2:469909/98‑1 (MQ=255)

                             aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc                                                                        >  1:3632229/1‑100 (MQ=255)

                             aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc                                                                        <  1:3741927/100‑1 (MQ=255)

                                aaTCAGCAGCCACGATAACTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcg                                                                     >  2:819363/1‑100 (MQ=255)

                                  tCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgcc                                                                   >  1:2830359/1‑100 (MQ=255)

                                  tCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgcc                                                                   <  1:3428328/100‑1 (MQ=255)

                                    agcagcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgccgc                                                                 >  2:167124/1‑100 (MQ=255)

                                    agcagcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgccgc                                                                 <  2:1251990/100‑1 (MQ=255)

                                        gcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATcc                                                             >  2:3389242/1‑100 (MQ=255)

                                          cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                           >  1:2155886/1‑100 (MQ=255)

                                          cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                           <  2:1305849/100‑1 (MQ=255)

                                          cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                           >  2:1265761/1‑100 (MQ=255)

                                           aCGATAGCTGGACCAATGGTCTGATTAACCGCTATAAAGCGTGGGGCGGTTAATCATCGTCTATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCgg                                                           <  2:2093542/99‑1 (MQ=25)

                                           aCGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                          <  1:3586481/100‑1 (MQ=37)

                                           aCGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                          <  2:3153280/100‑1 (MQ=255)

                                             gATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                        <  2:3493929/100‑1 (MQ=255)

                                               tAGCTCTACCAATGTTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAcc                                                      <  1:1608424/100‑1 (MQ=255)

                                               tAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAcc                                                      <  2:1224756/100‑1 (MQ=255)

                                               tAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAcc                                                      <  2:3781474/100‑1 (MQ=255)

                                                aGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGATAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCg                                                     >  2:3033016/1‑100 (MQ=255)

                                                 ggtCGACTAATGGTCTGATTAACCGCTATAAAGCGTGGCGGGGTTAATCATCGTCGATATGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAcc                                                      <  2:2691667/96‑1 (MQ=38)

                                                 gCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGa                                                    >  1:1243066/1‑100 (MQ=255)

                                                  cTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGAt                                                   >  1:3136761/1‑100 (MQ=255)

                                                  cTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGAt                                                   >  2:3910078/1‑100 (MQ=255)

                                                   tCGACCAATTGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATg                                                  <  1:3251469/100‑1 (MQ=255)

                                                   tCGACCAATGATCTGAAAAAAAGCTATAAAGCGTGGCGCGGATAATCATCATCAAAATGTAGGCAGGAAAAGACGTTCACGCACCATACAACAACCGa                                                    >  2:1134211/1‑98 (MQ=255)

                                                    cGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc                                                 <  2:1038986/100‑1 (MQ=255)

                                                        cAATGGTCTGATTAACCGCTATAAAGCGTGGTGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGa                                             <  1:865194/100‑1 (MQ=255)

                                                        cAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGa                                             <  1:2110366/100‑1 (MQ=255)

                                                         aaTGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGag                                            >  1:838401/1‑99 (MQ=255)

                                                          aTGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATg                                           <  1:1073578/100‑1 (MQ=255)

                                                          aTGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATg                                           <  1:1336414/100‑1 (MQ=255)

                                                             gTCTGATTAACCGCTATAAATCGTGGGGCGGTTTATCATCGTCGATATGTAGGCCTTATAAGTCGTGCACGCCGCATCCGGCAACCGATGCCTg                                              <  2:3665210/94‑1 (MQ=37)

                                                              tCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAc                                       >  2:1024755/1‑100 (MQ=255)

                                                              gatgattaaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAAGCCGGATAAGGCATTCACACAGAATCCGGCAACCGATGCCTGATGCGAc                                       >  1:1109624‑M2/38‑100 (MQ=255)

                                                              gatgattaaccgcgccacgatttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGAGTTCACACCGCATCCGGCAACCGATGCCTGATGCGa                                        >  2:1027465‑M2/38‑99 (MQ=255)

                                                                tgattaaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgc                                     >  1:2450992‑M2/36‑100 (MQ=255)

                                                                 GATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGACTGATGCGAcgcg                                    <  1:3244842‑M1/100‑1 (MQ=255)

                                                                  ATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATTTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgcg                                    >  1:2327219‑M1/1‑99 (MQ=255)

                                                                  ATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCgg                                   <  2:511702‑M1/100‑1 (MQ=255)

                                                                  ATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATACCTGATGCGACGCgg                                   <  1:2594844‑M1/100‑1 (MQ=255)

                                                                   ttaaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCCGATGCGACGCGGt                                  >  1:677626‑M2/33‑100 (MQ=255)

                                                                     aaCCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCAGGCATCGGTTGCCGGATGCggcgtgaacg                                <  1:1446254/100‑10 (MQ=21)

                                                                     AACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg                                >  1:2545257‑M1/1‑100 (MQ=255)

                                                                       CCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgcg                              >  2:3309201‑M1/1‑100 (MQ=255)

                                                                       CCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgcg                              <  1:857442‑M1/100‑1 (MQ=255)

                                                                         GCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTc                            >  2:2144331‑M1/1‑100 (MQ=255)

                                                                          ctaaagggCGTGGCGCGGTTAATCATCGTCGTTATGTAGGCCGGATAACGCGTTCACGCCGCATCCGGCATCCGTTGCCTGATGCGACGCGGTCGCGTCt                           <  2:1485088/93‑1 (MQ=21)

                                                                          CTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCt                           >  1:1171076‑M1/1‑100 (MQ=255)

                                                                           tataAAGCGTGGCGTTGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCt                           <  1:1717450/99‑1 (MQ=255)

                                                                               aaGCGTGGCGTGTTTAATCATTGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCa                      <  1:914404/100‑1 (MQ=255)

                                                                               aaGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCa                      >  2:3183441/1‑100 (MQ=255)

                                                                                aGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAg                     >  1:98323/1‑100 (MQ=255)

                                                                                 tcGTGGCGCGCTTAATCATCGTCGATATGTAGGCCGGATAAGTCGTTCACGCCTCTTCCGGCAACCGATGCCTGTTTTTACGCGGTCGCGTCTTATc                       <  2:934558/96‑1 (MQ=21)

                                                                                 gCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAgg                    <  2:1897783/100‑1 (MQ=255)

                                                                                   gtggtgCGTTTAATCATTGTCTATATGTTTGTCGGATAAGGCGTTCACGCCGCAGCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc                  <  1:3292450/100‑1 (MQ=18)

                                                                                    tGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCGCGTCGCATCAGGcat                 <  2:2724239/100‑3 (MQ=21)

                                                                                       cgcgGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACa              <  1:3924635/100‑1 (MQ=255)

                                                                                        gctgTTAATCTGCCTCGATATGTAGGCCGGATAAGGCGTTCACGCCCCATCCTTCAACCGATACCTGATAAGACGCTACCGCGTCGCACCAGGcatcgg              <  2:793194/96‑6 (MQ=9)

                                                                                        gcgGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCGCGTCGCATCAGGcatcggt             <  1:3793929/100‑7 (MQ=18)

                                                                                          ngttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAg             >  1:2019112‑M2/10‑98 (MQ=255)

                                                                                          ggataatcaTCGTCGATATGTAGGCCGAATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAgg                    <  2:2897112‑M2/82‑1 (MQ=255)

                                                                                           gttaatcaTCGTCGATATTTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTc          <  1:1532521‑M2/92‑1 (MQ=255)

                                                                                               atcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATg      <  2:2492824‑M2/96‑1 (MQ=255)

                                                                                                tcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGc     >  1:1939022‑M2/4‑100 (MQ=255)

                                                                                                 caTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGcc    >  1:944427‑M2/3‑100 (MQ=255)

                                                                                                  aTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAggtcgacgatg   >  1:195979‑M2/2‑95 (MQ=255)

                                                                                                  aTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCg   >  2:1378757‑M2/2‑100 (MQ=255)

                                                                                                  aTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCg   >  2:3606062‑M2/2‑100 (MQ=255)

                                                                                                  aTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCg   >  1:525988‑M2/2‑100 (MQ=255)

                                                                                                  aTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCg   <  1:3340506‑M2/99‑1 (MQ=255)

CGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA  >  NC_000913/4235312‑4235510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.