New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 786696 =NA (NA)7 (0.050) 5/166 NT NA intergenic (+11/+147) aroG/gpmA 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1
?NC_000913 786726 = NA (NA)intergenic (+41/+117) aroG/gpmA 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1

Only 100 of 175 total aligned reads displayed.

AGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAA  >  NC_000913/786597‑786794
                                                                                                   |                                                                                                  
agagCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGt                                                                                                    >  2:2031068/1‑100 (MQ=255)
 gagCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTc                                                                                                   <  2:568025/100‑1 (MQ=255)
  gaaagtctactgcaagtgagttggcttttttgttgctaataatggagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCg                                                                                                  >  1:3270800‑M1/98‑100 (MQ=255)
  gaaagccgactgcaagtgagtctgctttttttttgctaataatgtagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCg                                                                                                  >  1:993296‑M1/98‑100 (MQ=255)
  agCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCg                                                                                                  <  1:1268698/100‑1 (MQ=255)
  agCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCg                                                                                                  <  1:3853336/100‑1 (MQ=255)
   tcccagccGATGCAGGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCgg                                                                                                 >  1:1807001/7‑100 (MQ=255)
   ggaacacaGATGCCTGCATAGGCTGGGAAAATACAGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCg                                                                                                  <  2:768034/95‑1 (MQ=255)
   aaagccgactgcaagtgagtcggcttttttgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCgg                                                                                                 >  2:1096069‑M1/97‑100 (MQ=255)
    cccagccGATGCAGGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGa                                                                                                >  1:3046386/6‑100 (MQ=255)
    cATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGa                                                                                                <  2:2159065/100‑1 (MQ=255)
    aacccgacttcaagtgagtccgcttttttgttgctaccaatggagcccattgcctgatgcgatgctgcgcgacttatcaggcctgtggtgattcaTCg                                                                                                  >  2:2677840‑M1/96‑98 (MQ=255)
     atccgactgcaagtgagtcggcttttttgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCGGa                                                                                                >  2:1406249‑M1/95‑99 (MQ=255)
     agccgactgcaagtgagtcggctttttttttgctaacaatggatcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCGGAt                                                                                               >  1:1576176‑M1/95‑100 (MQ=255)
     agccgactgcaagtgagtcggcttttttgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattgaTCGGAt                                                                                               >  1:2051701‑M1/95‑100 (MQ=255)
     aTCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGAt                                                                                               <  1:2419719/100‑1 (MQ=255)
       cACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATgc                                                                                             <  2:1031311/100‑1 (MQ=255)
       cACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATgc                                                                                             >  1:2348495/1‑100 (MQ=255)
          cGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGcc                                                                                          >  1:2850493/1‑100 (MQ=255)
          cGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCATCGCGGGTAAGGTTTAATTGTCGGATGCGcc                                                                                          >  1:1949659/1‑100 (MQ=255)
             tGCCTGCATCGGCTGGGAAGATACCGATGCTTTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTc                                                                                       <  1:246831/100‑1 (MQ=255)
             tGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTc                                                                                       <  1:2878464/100‑1 (MQ=255)
              gCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTc                                                                                       <  2:516485/99‑1 (MQ=255)
               ccTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCACGGGTAAGGTTTAATTGTCGGATGCGCCGTCa                                                                                      >  1:94322/1‑99 (MQ=255)
                cTGCATCGACTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGCTgaaccg                                                                                         >  2:3543253/1‑90 (MQ=255)
                   cATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTg                                                                                 <  2:1892740/100‑1 (MQ=255)
                   cATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTg                                                                                 <  2:3398225/100‑1 (MQ=255)
                    aTCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGTTTTAATTGTCGGATGCGCCGTCAGAGTgg                                                                                <  2:526913/100‑1 (MQ=255)
                       ggCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGc                                                                               >  2:1199592/1‑98 (MQ=255)
                       ggCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGt                                                                             >  1:587150/1‑100 (MQ=255)
                       ggCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGACGCGGGTAAGGATTAATTGTCGGATGCGCCGTCAGAGTGGCGt                                                                             >  1:106365/1‑100 (MQ=255)
                         cTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGTCGTCAGAGTGGCGTAt                                                                           >  1:1567481/1‑100 (MQ=255)
                         cTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTAt                                                                           >  2:3778334/1‑100 (MQ=255)
                         cTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTAt                                                                           >  1:3912472/1‑100 (MQ=255)
                          tgtgAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATc                                                                          <  2:3702191/97‑1 (MQ=255)
                          tGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATc                                                                          <  1:663238/100‑1 (MQ=255)
                           gggAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATcc                                                                         <  1:493641/100‑1 (MQ=255)
                            tttttgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacgtatcaggcttgttgtgattcaTCGTATGCGCCGTCAGAGTGGCGTATCCg                                                                        >  2:1750781‑M1/72‑100 (MQ=255)
                            ggAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCg                                                                        >  1:3583813/1‑100 (MQ=255)
                            ggAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCg                                                                        <  1:2508911/100‑1 (MQ=255)
                             gAAGAGACCGATGCTGTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGa                                                                       <  2:3367560/100‑1 (MQ=255)
                              tttgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCGGATGCGCCGTCAGAGTGGCGTATCCGAt                                                                      >  1:683827‑M1/70‑100 (MQ=255)
                              aaGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGAt                                                                      <  1:2704769/100‑1 (MQ=255)
                               ttgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacttatcaggcctgtggtgattcaTCGGATTCGCCGTCAGAGTGGCGTATCCGATg                                                                     >  2:803145‑M1/69‑100 (MQ=255)
                               aGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATg                                                                     <  2:2117982/100‑1 (MQ=255)
                                tgttgctaacaatggagcacattgcctgatgcgacgctgcgcgacttatcaggcttgtggtgattcaTCGGATGCGCCGTCAGAGTGGCGTATCCGATGa                                                                    >  1:2251805‑M1/68‑100 (MQ=255)
                                gATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGa                                                                    >  2:1463372/1‑100 (MQ=255)
                                 aTACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGaa                                                                   <  2:1806986/100‑1 (MQ=255)
                                  tACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAAt                                                                  <  2:1619876/100‑1 (MQ=255)
                                  tACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCATCAGAGTGGCGTATCCGATGAAt                                                                  >  2:2235139/1‑100 (MQ=255)
                                    ccGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTATCGGATGCGCCGTCAGAGTAGCGTATCCGATGAATca                                                                >  1:1702264/1‑100 (MQ=255)
                                     cGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATACGCCGTCAGAGTGGCGTATCCGATGAATcac                                                               <  1:597971/100‑1 (MQ=255)
                                       aTGCTCTGTTATGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGTATGCGCCGTCAGAGTGGCGTATCCGATGAATcacc                                                              <  2:2715798/99‑1 (MQ=255)
                                          ctctGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAg                                                          >  1:3183610/1‑100 (MQ=255)
                                             tGTTACGTCAACTGGCGAATGCAGTAAAAGCGCTTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATTCGATGAATCACCACAGGc                                                        <  2:1668572/99‑1 (MQ=255)
                                             tGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGcc                                                       <  1:2722638/100‑1 (MQ=255)
                                              gTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCTCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCt                                                      <  1:1394891/100‑1 (MQ=255)
                                              gTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCt                                                      >  2:1219287/1‑100 (MQ=255)
                                               ttACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTg                                                     <  1:3643435/100‑1 (MQ=255)
                                               ttACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTg                                                     <  2:944107/100‑1 (MQ=255)
                                               ttACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTg                                                     <  2:3203125/100‑1 (MQ=255)
                                                 aCGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGAt                                                   <  2:1306635/100‑1 (MQ=255)
                                                 aCGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGAt                                                   >  1:1815741/1‑100 (MQ=255)
                                                  cGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCGCCACAGGCCTGATa                                                  >  1:1614551/1‑100 (MQ=255)
                                                  cGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATa                                                  <  2:680540/100‑1 (MQ=255)
                                                  cGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATa                                                  >  1:1782175/1‑100 (MQ=255)
                                                  cGTCAACTGCCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATa                                                  >  2:708074/1‑100 (MQ=255)
                                                    tCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAg                                                <  1:791519/100‑1 (MQ=255)
                                                     cAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAATGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGt                                               <  1:3440137/100‑1 (MQ=255)
                                                     cAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGt                                               <  1:1287406/100‑1 (MQ=255)
                                                        cTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTcgc                                            >  2:1600720/1‑100 (MQ=255)
                                                          ggCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCgcgc                                          >  1:3069506/1‑100 (MQ=255)
                                                           gCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCa                                         <  1:1453890/100‑1 (MQ=255)
                                                             gAATGCTTTAAAATTGCGTCGCTGTTAAGGTTTAATTTTCGGATGCGACGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAg                                        <  1:1112607/99‑1 (MQ=255)
                                                              actGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGCATGCGCCGTCAGAGTGGCGTATCCGATGAATCAACACAGGCCTGATAAGTCGCGCAGCg                                      <  2:2438742/98‑1 (MQ=255)
                                                              aaTGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCg                                      <  1:2159304/100‑1 (MQ=255)
                                                                  cAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGc                                  <  2:1722072/100‑1 (MQ=255)
                                                                  cAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGc                                  <  1:2994615/100‑1 (MQ=255)
                                                                  cAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGc                                  <  1:2974764/100‑1 (MQ=255)
                                                                  cAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGc                                  >  2:2109793/1‑100 (MQ=255)
                                                                  cAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGc                                  >  2:2321489/1‑100 (MQ=255)
                                                                   aGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGAAGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTTGCGCAGCGTCGCa                                 >  2:540760/1‑100 (MQ=255)
                                                                     tAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATc                               >  2:1254344/1‑100 (MQ=255)
                                                                      aaaaGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCa                              <  2:3139872/100‑1 (MQ=255)
                                                                      aaaaGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCa                              >  1:3343353/1‑100 (MQ=255)
                                                                                 gcgGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCt                   >  2:3616993/1‑100 (MQ=255)
                                                                                 gcgGGTAAGGTTTAATGGTCGGATGCGCCGTCAGAATGGCTTATCTGATGTTTCACCACAGGACTGATAAGTCGCGCAGCGTCGGATCAGGAAAtgt                      <  2:395696/97‑1 (MQ=255)
                                                                                   gggTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTcc                 <  1:1418842/100‑1 (MQ=255)
                                                                                       aaGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTg             >  2:1507111/1‑100 (MQ=255)
                                                                                        aGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGAGGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGt            >  2:2137290/1‑100 (MQ=255)
                                                                                          gTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTa          <  2:956353/100‑1 (MQ=255)
                                                                                          gTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTa          >  2:3818399/1‑100 (MQ=255)
                                                                                          gTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTa          >  2:2628489/1‑100 (MQ=255)
                                                                                          gTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCCTCGCATCAGGCAATGTGCTCCATTGTTa          >  2:1235984/1‑100 (MQ=255)
                                                                                           tttAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAg         >  1:2029813/1‑100 (MQ=255)
                                                                                               aTTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGcaac     <  2:1555964/100‑1 (MQ=255)
                                                                                                 tGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGcaacaa   >  2:2251703/1‑100 (MQ=255)
                                                                                                  gTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGcaac     >  2:3186239/1‑97 (MQ=255)
                                                                                                  gTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACaaa  <  1:3173447/100‑1 (MQ=255)
                                                                                                  gTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACaaa  >  1:2394298/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
AGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAA  >  NC_000913/786597‑786794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.