New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4460417 =NA (NA)12 (0.090) 8/168 NT NA noncoding (3/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4460445 = NA (NA)noncoding (31/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 217 total aligned reads displayed.

GTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCA  >  NC_000913/4460347‑4460544
                                                                                                  |                                                                                                   
 tACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGAcc                                                                                                   <  2:3416877/100‑1 (MQ=255)
 tACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGAcc                                                                                                   <  1:485236/100‑1 (MQ=255)
 tACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGAcc                                                                                                   <  1:2980472/100‑1 (MQ=255)
 tACTGATGACAATTCATTATTTAGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGAcc                                                                                                   >  2:3375536/1‑100 (MQ=255)
  tgagcttagtaaatgccggattcggcgtaaacgccttatccggcctacatttggcaattgctccaggtCTGATGCGACGCTGTCGCGTCTTATCAGACCt                                                                                                  >  1:1796034‑M1/69‑100 (MQ=255)
  tgagctaagcaaatgccggatgcggcgtaaacgccttatccggcctacatttggcaattgctccaggtCTGATGCGACGCTGTCGCGTCTTATCAGACCt                                                                                                  >  2:1892558‑M1/69‑100 (MQ=255)
  aCTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCt                                                                                                  >  2:839971/1‑100 (MQ=255)
  aCTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCt                                                                                                  >  2:3766124/1‑100 (MQ=255)
   cTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCt                                                                                                  >  1:684854/1‑99 (MQ=255)
   cTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTg                                                                                                 <  2:3018776/100‑1 (MQ=255)
     gctaagcaaatgccggatgcggcgtaaacgccttatccggcctacatttggcaattgctccaggtCTGATGCGACGCTGTCGCGTCTTATCAGACCTgg                                                                                                >  2:2181757‑M1/66‑99 (MQ=255)
     gatgatAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGa                                                                                               >  1:3292840/1‑100 (MQ=255)
       tgatAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGc                                                                                             >  2:3822278/1‑100 (MQ=255)
          tAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAAt                                                                                          >  2:1282567/1‑100 (MQ=255)
           aaTTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGTCTGCATCCGGTAATCAATGTCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAAtt                                                                                         <  2:2131593/100‑1 (MQ=255)
            aTTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTg                                                                                        >  2:929041/1‑100 (MQ=255)
             ttCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGc                                                                                       >  1:1676270/1‑100 (MQ=255)
                 ttattTCGCCTGCCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCaaa                                                                                   <  2:2952781/100‑1 (MQ=255)
                  tattTCGTCTTGCTTATCAGTTCGCGTGTAGTCTGCATCCGTTAATCAATGCCTGATGCGACTCTTTCGCGTTTTATCAGACCTGGATCAATTGCCTAAt                                                                                  <  2:324263/100‑1 (MQ=25)
                    tttCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGt                                                                                >  1:996000/1‑100 (MQ=255)
                    tttCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGt                                                                                <  2:1229591/100‑1 (MQ=255)
                    tttCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGt                                                                                >  1:2309499/1‑100 (MQ=255)
                      tCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAg                                                                              <  2:2432756/100‑1 (MQ=255)
                       cGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAgg                                                                             >  1:1064393/1‑100 (MQ=255)
                       cGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAgg                                                                             >  1:3138710/1‑100 (MQ=255)
                        gCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAgg                                                                             >  1:1025124/1‑99 (MQ=255)
                          cTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCACGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGc                                                                            >  1:3606964/1‑98 (MQ=255)
                           ttgCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCgg                                                                         <  1:954544/98‑1 (MQ=255)
                           tGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCgg                                                                         <  2:1485142/100‑1 (MQ=255)
                            ggCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGa                                                                        <  1:1333839/100‑1 (MQ=255)
                              cTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATa                                                                      >  1:2245297/1‑100 (MQ=255)
                               ttATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATaa                                                                     <  2:3108581/100‑1 (MQ=255)
                                tATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAg                                                                    >  2:2286198/1‑100 (MQ=255)
                                tATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAg                                                                    >  2:3839952/1‑100 (MQ=255)
                                 aTCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAgg                                                                   >  1:2133986/1‑100 (MQ=255)
                                  tCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGc                                                                  >  2:1825707/1‑100 (MQ=255)
                                    aGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGt                                                                <  2:2037422/100‑1 (MQ=255)
                                    aGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGt                                                                >  1:1566279/1‑100 (MQ=255)
                                    aGTCCGCATGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGt                                                                >  1:2057451/1‑100 (MQ=255)
                                       ccGCGTGTAGGATGCATGCGGTAATCAATGACTTATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGttt                                                              <  1:2783235/99‑1 (MQ=25)
                                        cgcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAc                                                            <  1:513742/100‑1 (MQ=255)
                                        cgcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAc                                                            <  2:507329/100‑1 (MQ=255)
                                         gcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGAACTGAAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcg                                                           >  1:1210980/1‑100 (MQ=255)
                                           gtgtAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgcc                                                         <  2:2365532/100‑1 (MQ=255)
                                            tgtAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgccg                                                        <  2:1129422/100‑1 (MQ=255)
                                            tgtAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgccg                                                        <  2:270704/100‑1 (MQ=255)
                                             gtAGGCTGCATCCGGTAATCAATGCCGGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgc                                                          <  2:2323370/97‑1 (MQ=255)
                                              tAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCTCGTCTTATCAGACCTAGAGCAATTACCAAATATAGGCCGGATAAGGCGTTTACGCCGCa                                                      >  1:3480692/1‑100 (MQ=25)
                                                ggCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                     >  1:912953/1‑99 (MQ=255)
                                                 gCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTAAACGCCTTATcc                                                   <  2:782898/100‑1 (MQ=21)
                                                  cTGCATCCGGTAATCAATGCTTGATGCGACGCTGTCGCGTTTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATGCGGCGTAAACGCCTTATCCg                                                  <  1:2440922/100‑1 (MQ=21)
                                                   tGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                 <  1:2730309/100‑1 (MQ=255)
                                                   tGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                 <  1:3743678/100‑1 (MQ=255)
                                                     cATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                               <  2:3515184/100‑2 (MQ=21)
                                                       tCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAtt                                             <  2:3351290/100‑1 (MQ=255)
                                                       tCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAtt                                             <  2:1064382/100‑1 (MQ=255)
                                                       tCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAtt                                             >  2:580993/1‑100 (MQ=255)
                                                        ccGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCGGACCTGGAGCAATTGCCAAATGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                               <  2:2504918/97‑2 (MQ=21)
                                                        ccGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAttt                                            >  1:3805870/1‑100 (MQ=255)
                                                        ccGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAttt                                            >  2:642183/1‑100 (MQ=255)
                                                        caattgctccaggtctgataagacgcgacagcgtcgcatcagACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAttt                                            >  1:1234684‑M2/43‑100 (MQ=255)
                                                         cGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTg                                           >  1:2189308/1‑100 (MQ=255)
                                                         cGGTAATCAATGCCTGATGAGACGCTGTCGCGTCTTATCAGACCTGGAGCGATTGCCAAATGTAAGCCGGATAAGGCGTTTACGCCGCCTCCAGCaat                                             >  2:2865785/1‑96 (MQ=21)
                                                          ggTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGc                                          <  1:2077178/100‑1 (MQ=255)
                                                           gTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCt                                         <  2:1974586/100‑1 (MQ=255)
                                                           gTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCt                                         <  2:1462732/100‑1 (MQ=255)
                                                            ttccgatctccTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCtt                                        <  1:302029/91‑1 (MQ=255)
                                                             aaTCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTa                                       <  2:1566331/100‑1 (MQ=255)
                                                             aaTCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTa                                       <  1:1293434/100‑1 (MQ=255)
                                                               tCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGc                                     <  1:1624518/100‑1 (MQ=255)
                                                               tCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGc                                     <  2:2800906/100‑1 (MQ=255)
                                                                ccaggtctgataagacgcgacagcgtcgcatcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCt                                    >  2:1320619‑M2/35‑100 (MQ=255)
                                                                cAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTACCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCt                                    >  1:1410358/1‑100 (MQ=255)
                                                                    gtctgataagacgcgacagcgtcgcatcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCaga                                >  1:1432918‑M2/31‑100 (MQ=255)
                                                                       TGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTg                             >  1:2664262‑M1/1‑100 (MQ=255)
                                                                       TGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGACCACATAAGACGATTACACCGCATCCGGCATTTGCTTAGCTCAGAGTg                             <  1:383462‑M1/100‑1 (MQ=255)
                                                                        gataagacgcgacagcgtcgcatcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGa                            >  1:2218504‑M2/27‑100 (MQ=255)
                                                                        GATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGa                            <  1:1171286‑M1/100‑1 (MQ=255)
                                                                        GATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGa                            <  1:3421811‑M1/100‑1 (MQ=255)
                                                                          TGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAg                          <  1:305948‑M1/100‑1 (MQ=255)
                                                                             gACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGAtt                       >  1:1824871/1‑100 (MQ=255)
                                                                                 cTGTCTCGTCTTATCATACCTTGATTTATTGCTAATGGTATTTCTGATAATGGGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAAcc                   <  1:2277257/100‑1 (MQ=255)
                                                                                 cTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAAcc                   >  1:3788490/1‑100 (MQ=255)
                                                                                 cTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAAcc                   <  2:2114716/100‑1 (MQ=255)
                                                                                 cTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAAcc                   <  1:333537/100‑1 (MQ=255)
                                                                                     cgcgTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGTTTGATAAGGCGTTTACGCAGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATc               <  1:784403/100‑1 (MQ=38)
                                                                                     cgcgTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATc               >  1:35112/1‑100 (MQ=255)
                                                                                     cgcgTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATc               <  1:3543556/100‑1 (MQ=255)
                                                                                      gcgTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCt              >  1:2932649/1‑100 (MQ=255)
                                                                                        gTCTTATCAGACCTGGAGTAATTGCCAAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGc            <  1:1376638/100‑1 (MQ=255)
                                                                                         tCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGcc           <  1:464064/100‑1 (MQ=255)
                                                                                           ttATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCa         <  1:2767699/100‑1 (MQ=255)
                                                                                           ttATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCa         >  2:855075/1‑100 (MQ=255)
                                                                                            tATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCAt        >  1:1978399/1‑100 (MQ=255)
                                                                                             atcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCAtt       <  2:1676255‑M2/95‑1 (MQ=255)
                                                                                             atcagACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCAtt       >  2:2917259‑M2/6‑100 (MQ=255)
                                                                                               cAGACCTGGAGCAATTGCAAAATGTAGGCCGGATAAGGAGTTTACGCCGCATCCGGCATTTGCTCAGCTCAAAGTGAAGATTAACCTATCTGCCCAtcc      >  2:2599559/1‑97 (MQ=37)
                                                                                                agACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTccc    <  2:819819‑M2/98‑1 (MQ=255)
                                                                                                 gACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGTCATTTGCTTAACTCAGAATTAAGATTAACCTATCTCCCCATTcccc   >  1:402871‑M2/2‑100 (MQ=255)
                                                                                                  aCCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCa  >  1:3486132/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCA  >  NC_000913/4460347‑4460544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.