New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 900799NA (NA)8 (0.060) 6/164 NT NA noncoding (51/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 900831 NA (NA)noncoding (83/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 152 total aligned reads displayed.

AAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTCAGCAGGC  >  NC_000913/900732‑900930
                                                                                                   |                                                                                                   
aaGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGAC                                                                                                     <  1:2238845‑M2/100‑1 (MQ=255)
aaGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGAC                                                                                                     <  1:386133‑M2/100‑1 (MQ=255)
  gAATTTATGCACTATGTAGGCCGGTTAAGGCGTCCCCGCCGCGTCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGAC                                                                                                     <  1:2737191‑M2/98‑1 (MQ=255)
  gAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGACACCTTGCTTAGATCTAATACGACTCTGGCTCGTCTTATCAGATCt                                                                                                   >  1:3127144/1‑100 (MQ=25)
       tATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACaaa                                                                                              <  1:3868766/100‑1 (MQ=255)
        aTGCACTATGTAGGCCGTATAAGGTGTCACCGTCGCTTCCGGCATAGGTACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACaaaa                                                                                             <  1:45679/100‑1 (MQ=25)
         tGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAc                                                                                            <  1:3826701/100‑1 (MQ=255)
           cACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAccc                                                                                          >  1:1204330/1‑100 (MQ=255)
           cACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACACTGGCGCGTCTTATAAGACCTACAAAAcc                                                                                           >  1:3320441/1‑99 (MQ=255)
            aCTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcccc                                                                                         <  1:1852306/100‑1 (MQ=255)
              tATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcccccc                                                                                       <  2:748328/100‑1 (MQ=255)
              tATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcccccc                                                                                       >  1:2837943/1‑100 (MQ=255)
              tATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcccccc                                                                                       <  2:747935/100‑1 (MQ=255)
                tGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCATCTTATCAGACCTACAAAACCCCCCgg                                                                                     >  1:2079098/1‑100 (MQ=255)
                  tAGGCTGGATAAGGCGCCCCCGCCGTATCCGTAATAGGCACCGTGTTGATGTCTCATTCGACGCTGGCGCGTTTTATTAGTCCTACAAAACCCCCCGGCg                                                                                   <  2:1931219/100‑1 (MQ=255)
                   aGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGa                                                                                  <  2:2873357/100‑1 (MQ=255)
                    ggCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGaa                                                                                 >  2:3650019/1‑100 (MQ=255)
                       cGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGt                                                                              <  2:2472864/100‑1 (MQ=255)
                        ggATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTa                                                                             <  2:1684181/100‑1 (MQ=255)
                        ggATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTa                                                                             <  1:2510544/100‑1 (MQ=255)
                          aTAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTa                                                                             <  1:2781779/98‑1 (MQ=255)
                          aTAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACg                                                                           <  1:1898480/100‑1 (MQ=255)
                           tAAGGCGTCCCCGCCGCATCCGGCACAGTCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGc                                                                          <  1:3831041/100‑1 (MQ=255)
                           tAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGc                                                                          <  2:1397722/100‑1 (MQ=255)
                             aGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAg                                                                        >  2:3089067/1‑100 (MQ=255)
                              ggCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGc                                                                       <  1:3325123/100‑1 (MQ=255)
                               gCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGcc                                                                      >  2:3480450/1‑100 (MQ=255)
                               gCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGcc                                                                      >  2:1495911/1‑100 (MQ=255)
                                   ccccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCTAATGTACGCAGCCACAt                                                                  >  2:2854662/1‑100 (MQ=255)
                                   ccccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACAt                                                                  >  2:800350/1‑100 (MQ=255)
                                    cccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACAtt                                                                 >  1:295104/1‑100 (MQ=255)
                                    cccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACAtt                                                                 >  2:2456198/1‑100 (MQ=255)
                                    cccGCCGCATCCGGCACAGGCAACGAGCTGATGTATGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCACCGGCGAATGTACGCAGCCACAtt                                                                 >  2:2360194/1‑100 (MQ=38)
                                        ccgcATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAAtt                                                             <  1:2460723/100‑1 (MQ=255)
                                        ccgcATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATACAAAACCCCCCGGCGAATGTACGCAGCCACATTAAtt                                                             >  1:1219779/1‑100 (MQ=255)
                                          gcATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTc                                                           <  1:3650058/100‑1 (MQ=255)
                                           cATCCGGCACAGGCACCGTGCTGATGTCTGATGTGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCg                                                          <  1:1410445/100‑1 (MQ=255)
                                           cATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTaa                                                               >  1:1075108/1‑95 (MQ=255)
                                           cATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCg                                                          <  2:3634195/100‑1 (MQ=255)
                                           cATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCg                                                          <  2:3090729/100‑1 (MQ=255)
                                            aTCCGGCACAGGCACCGTGCTGATGTCTGATGTGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCg                                                          <  1:315684/99‑1 (MQ=255)
                                            aTCCGGCACAGGCACCGTGCTGATGTCTGATGCTACGCTTGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGc                                                         <  1:239985/100‑1 (MQ=255)
                                            aTCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGc                                                         <  2:1075097/100‑1 (MQ=255)
                                              ccGGCACAGGCACCGTGCTGATGTTTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCg                                                       <  1:624971/100‑1 (MQ=255)
                                              ccGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGcc                                                        >  1:975734/1‑99 (MQ=255)
                                              ccGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCg                                                       >  1:3632076/1‑100 (MQ=255)
                                              ccGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCACACCTACAAAACCCCCCGGCGAATGTACGCAGCAACATTAATTTCGcag                                                       >  1:3561344/1‑98 (MQ=255)
                                                 gCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTc                                                    <  2:1623820/100‑1 (MQ=255)
                                                  cacaGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCg                                                   <  2:2902638/100‑1 (MQ=255)
                                                   acaGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGa                                                  <  1:1018081/100‑1 (MQ=255)
                                                     aGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAAt                                                <  1:701716/100‑1 (MQ=255)
                                                     aGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAAt                                                >  2:3452291/1‑100 (MQ=255)
                                                      ggCACCGTGCTGATGTCTGATGCGACGCTTGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGGCGTTCGAATg                                               >  2:1495002/1‑100 (MQ=255)
                                                      ggCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGCATg                                               >  1:2679980/1‑100 (MQ=255)
                                                      ggCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATg                                               <  2:1701418/100‑1 (MQ=255)
                                                      ggCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATg                                               >  2:46305/1‑100 (MQ=255)
                                                      ggCACCGTGCTGATGTCTGATCCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATg                                               <  2:3140386/100‑1 (MQ=255)
                                                        cACCGTGCTGATGTCTGATGCTACGCTTGCTCTTCTTATTAGACCTACAAAACCTCCCGGCGTATGTATTCAGCCACATTAATTTCGCCCTTCGAATGcc                                             <  2:691475/100‑1 (MQ=255)
                                                            gTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAgcg                                         <  2:3429198/100‑1 (MQ=255)
                                                             tGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAgcgc                                        <  2:1320523/100‑1 (MQ=255)
                                                              gCTGATGTCTGATGCGACGCTGGCGCGTCTTATAAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataa                                       <  2:1552758‑M2/100‑63 (MQ=255)
                                                               cTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaa                                      <  1:1338440‑M2/100‑64 (MQ=255)
                                                                tGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagatcggaaga                                     <  2:3421484‑M2/100‑65 (MQ=255)
                                                                tGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCttt                                     >  1:1133984/1‑100 (MQ=255)
                                                                tGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACACAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCttt                                     >  1:87102/1‑100 (MQ=255)
                                                                tGATATCTGATGCGACGCTGGCGCGTCTTATCAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaat                                     <  1:398832‑M2/100‑65 (MQ=255)
                                                                 gATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTg                                    <  1:1784227/100‑1 (MQ=255)
                                                                 gATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATATACGCAGACACAATAATTTAACCGTTCAAATGCAAGCGATTTg                                    >  1:617691/1‑100 (MQ=25)
                                                                  aTGTCTGATGCGACGCTGGCGCGTCTTATCAGACTTACAAATCCCCCCGGCGAATGTACGCAGCAACATTAATTTCGCCGTTCGAATGCCAGCGCTTTgc                                   <  1:1151979/100‑1 (MQ=255)
                                                                    gTCTGATGCGACGCTGGCGCGTCTTATCAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaattctt                                 <  1:3009314‑M2/100‑69 (MQ=255)
                                                                    gTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTgcgc                                 <  2:3890056/100‑1 (MQ=255)
                                                                    gTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTgcgc                                 >  1:92432/1‑100 (MQ=255)
                                                                       tGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATATCGCCGTTCGAATGCCAGCGCTTTGCGCTc                               >  1:2366349/1‑99 (MQ=255)
                                                                         aTGCGACGCTGGCGCGTCTTATCAGACCTACAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATc                           <  1:711843/100‑1 (MQ=255)
                                                                          tGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATTTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCACTTTGCGCTCGATc                           >  1:2248418/1‑100 (MQ=255)
                                                                          tGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATc                           <  1:1311354/100‑1 (MQ=255)
                                                                          tGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATc                           <  1:56531/100‑1 (MQ=255)
                                                                            cGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAg                         >  2:1156420/1‑100 (MQ=255)
                                                                               cGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACg                      >  1:3036828/1‑100 (MQ=255)
                                                                                gCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGc                     >  1:1893038/1‑100 (MQ=255)
                                                                                 cTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGca                    >  2:527359/1‑100 (MQ=255)
                                                                                   ggCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGcatc                  >  2:41588/1‑100 (MQ=255)
                                                                                        gTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAg             <  1:1030959/100‑1 (MQ=255)
                                                                                          cTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCg           <  1:1847623/100‑1 (MQ=255)
                                                                                          cTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCg           <  1:2967138/100‑1 (MQ=255)
                                                                                           ttATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCg           <  1:1777919/99‑1 (MQ=255)
                                                                                            tATCAGACCTACAAATCCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTc         <  1:2534530/100‑1 (MQ=255)
                                                                                            tATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTc         <  2:295098/100‑1 (MQ=255)
                                                                                             aTCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTca        >  1:3396607/1‑100 (MQ=255)
                                                                                             aTCAGACATACAAAACACCACGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTca        >  2:3170396/1‑100 (MQ=255)
                                                                                              tCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTcag       >  1:3612026/1‑100 (MQ=255)
                                                                                               cAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTcagc      <  2:564825/100‑1 (MQ=255)
                                                                                                aGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTcagca     >  1:2005604/1‑100 (MQ=255)
                                                                                                 gACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaattcttataatgaagacggacaacacactaa        <  1:1138313‑M2/96‑94 (MQ=255)
                                                                                                 gACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGACGTTCGAATGCCAGCGCTTTGCGCTCGATCAGCCGCATCATAAGCGTcagcag    >  2:1239100/1‑100 (MQ=255)
                                                                                                  aCCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTcagcag    <  1:3306366/99‑1 (MQ=255)
                                                                                                  aCCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTCAGCAgg   <  1:1416313/100‑1 (MQ=255)
                                                                                                   ccTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAACGTCAGCAGGc  >  2:1774820/1‑100 (MQ=255)
                                                                                                   catcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaattcttataatgaagacggacaacccactaagttgtc  >  2:1821171‑M2/1‑1 (MQ=255)
                                                                                                   catcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaattcttataatgaagacggacaacccactaagttgtc  >  2:1917859‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
AAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGCGCTCGATCAGACGCATCATCAGCGTCAGCAGGC  >  NC_000913/900732‑900930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.