New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2304590	130 (0.830)	27 (0.190)	12/164	NT	20.6%	noncoding (174/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 2304608	89 (0.620)					noncoding (192/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

TGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304485‑2304590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACAGC  <  NC_000913/2304608‑2304510                                                                                                                                                                                                                  TGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑G                                                                                                           <  2:1571812/100‑1 TGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑G                                                                                                           >  2:1684308/1‑100  GGCGCGTCTTATCAGGGCTAAACTGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GC                                                                                                          <  1:1989055/100‑1  GGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GC                                                                                                          >  2:1036798/1‑100   GCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCC                                                                                                         <  2:614092/100‑1    CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCgt                                                                                                        <  2:2996633/100‑3    CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCT                                                                                                        <  2:769290/100‑1    CGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCT                                                                                                        >  1:1540173/1‑100    CGCCTCTTAACAGCCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCC                                                                                                         <  2:3408740/99‑1     GCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTG                                                                                                       >  2:2612616/1‑100     GCGGCTTATCAGGCCTACACCGCGGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCC                                                                                                         <  1:78972/98‑1      CGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGA                                                                                                      >  2:2381771/1‑100       GTCTTATGAGGGCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCC                                                                                                         <  1:1621517/96‑1                   CTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAG                                                                                         <  2:1897034/100‑1                       ACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCT‑‑‑‑‑GACGCGCCAGCGTCGCATC                                                                                <  2:3637299/100‑1                           CTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCT‑‑‑‑‑GACGCGCCAGCGTCGCATCAGG                                                                             <  1:2376703/99‑1                              TGAAGTGCGGCACCCCGTAGGTCAGACCAGGCGGTCACGCCGCAGCCGCCATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAG                                                                              <  1:2255584/100‑1                              TGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAG                                                                              <  2:1389297/100‑1                               GAAGTGCGGCACCCCGTAGGTTGGAGAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGG                                                                             <  1:1041270/100‑1                               GAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGG                                                                             <  1:1848943/100‑1                                AAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                            <  2:1510081/100‑1                                AAGTGCCACACCCCGTAGGGCAGACAAGGCCGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                            <  1:858776/100‑1                                 AGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCA                                                                           <  2:1831053/100‑1                                  gtgctcCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAA                                                                          <  2:840784/94‑1                                  gtgctcCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAA                                                                          <  1:1036796/94‑1                                   tgctcCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  2:3643242/95‑1                                   TGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC                                                                         <  2:529859/100‑1                                   TGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAA                                                                          <  1:4413504/99‑1                                    gctcCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  2:2911418/96‑1                                    gctcCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  1:2965399/96‑1                                    gctcCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  1:979896/96‑1                                    gctcCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  1:2288554/96‑1                                    GCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  2:2724947/100‑1                                    GCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACC                                                                        <  2:3627345/100‑1                                     CGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCG                                                                       <  2:1565482/100‑1                                      tcCACCCCGTAGGTGGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG                                                                      <  1:2217689/98‑1                                      tcCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG                                                                      <  1:2121400/98‑1                                             CGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC                                                               <  1:4218868/100‑1                                               TAGGTCAGACAAGGCGGTCACGCCGCATCCGACATTCAACGCCCGAGCCGGTGTAGGCCTGATACGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGG                                                                <  1:3423833/100‑1                                                   TCAGACAAGGCGGTCACGCCGCATCCGACATCCAGCGCCCGAGCCGGT‑T‑‑GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGA                                                         <  1:2992401/100‑1                                                                                                 gcgcttccgTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGG                  <  2:4044260/87‑1                                                                                                     tgtgCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTAGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGC            <  1:2102904/94‑1                                                                                                       GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTGACCGCCTTATCTGACCTACGGGGTGCCGCACTT        >  1:2474919/1‑100                                                                                                       GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTT        <  2:1206188/100‑1                                                                                                       GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTT        <  1:3817993/100‑1                                                                                                       GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTT        <  2:506942/100‑1                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGGTCGGACGTTGGATGTCGGATGCGGCGTGACCGCCTTATCTGACCTACGGGGTGCCGCACTTC       >  1:2348332/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       >  1:303364/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       >  1:3841498/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       >  2:2803575/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       <  2:2474931/100‑1                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       >  2:4031584/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       >  1:4213755/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       >  1:2939840/1‑100                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       <  1:3343480/100‑1                                                                                                        CCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       <  1:132964/100‑1                                                                                                         cgGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCA      >  2:2989255/3‑100                                                                                                         CTGATAAGGCGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCA      <  2:3508300/100‑1                                                                                                         CTGATAAGACGCGGCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCA      <  2:3816724/100‑1                                                                                                         CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGTGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTC       <  2:1354313/99‑1                                                                                                         CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCA      >  1:1904167/1‑100                                                                                                         CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCA      <  2:88638/100‑1                                                                                                         CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCA      >  1:4090615/1‑100                                                                                                         CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGC            <  1:2103481/94‑1                                                                                                          TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     >  2:2600397/1‑100                                                                                                          TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     <  2:2296104/100‑1                                                                                                          TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     >  2:4260098/1‑100                                                                                                          TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     <  1:2540367/100‑1                                                                                                          TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     <  1:3880512/100‑1                                                                                                           GATAAGAGGCGCGAGCGCCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     <  2:544799/99‑1                                                                                                           GATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACA    <  1:3829765/100‑1                                                                                                           GATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACA    <  1:3724933/100‑1                                                                                                           GATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCAC     <  2:1447787/99‑1                                                                                                            ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACAG   <  2:2636897/100‑1                                                                                                            ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACAG   <  1:620630/100‑1                                                                                                            ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACAG   >  2:1339496/1‑100                                                                                                             TAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACAGC  >  1:3008280/1‑100                                                                                                                                                                                                                  TGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGT‑T‑‑GCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304485‑2304590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTGGATGTCGGATGCGGCGTGACCGCCTTGTCTGACCTACGGGGTGCCGCACTTCACAGC  <  NC_000913/2304608‑2304510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.