New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2304653	46 (0.290)	35 (0.240)	7/164	NT	24.3%	noncoding (237/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 2304782	176 (1.220)					noncoding (366/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304548‑2304653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggatGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  NC_000913/2304782‑2304684                                                                                                                                                                                                               TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTGTTATCAGGCCTACACCGCTGTGAAGTGCTTCACCCAGTAGG                                                                                                           >  1:3966750/1‑100 TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGG                                                                                                           <  1:3429615/100‑1    CGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCG                                                                                                        <  2:1878818/100‑1    CGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCG                                                                                                        <  1:2171154/100‑1    CGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGG                                                                                                           >  1:278365/1‑97    CGCCGCATCCGACATCCAACGCCCCAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTtg                                                                                                        <  1:3662557/100‑3     GCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCATCCCGTAGGTCGG                                                                                                       <  2:3471540/100‑1     GCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGG                                                                                                       >  1:3216682/1‑100     GCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGG                                                                                                       <  1:2950469/100‑1     GCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGG                                                                                                       <  1:2604475/100‑1      CCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGA                                                                                                      >  2:1161103/1‑100      CCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGA                                                                                                      >  2:2573887/1‑100        GCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAAGCGCCGCTGGCGCGTCTAATCAGGCCTACACCGCTGTGACGTGCTGCACCCCGTAGGTCGGAca                                                                                                    >  1:2122101/1‑98         CATCCGACATCCAACGCCCCGGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCG                                                                                                        <  1:2833676/95‑1                  TCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACC                                                                                          >  1:2742081/1‑100                    CAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCCGAaagggcgg                                                                                              >  1:2083799/1‑86                     AACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGGAACCGCC                                                                                       >  1:3817727/1‑100                          ccaAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATC                                                                                  <  2:620631/97‑1                          CCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATC                                                                                  <  1:1107374/100‑1                          CCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATC                                                                                  <  2:2742098/100‑1                          CCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATC                                                                                  <  2:3095342/100‑1                           taAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCCCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:852607/98‑1                           caAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:307699/98‑1                           caAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:2999539/98‑1                           caAGCCGGTTGCCTGATGCGACGCGGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:3735753/98‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:2732159/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:4402953/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:2732237/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:1767181/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:66028/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:805066/100‑1                           CGAGCCGCTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATC                                                                                  <  1:1684301/99‑1                            aAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCCCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCA                                                                                >  1:852604/2‑100                            GAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCtg                                                                                <  2:2975117/100‑3                             AGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCga                                                                               <  2:1645965/100‑3                             AGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:2524159/98‑1                             AGCCGGTTGCCTGATGCAACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCga                                                                               <  2:4074680/100‑3                              GCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAAC                                                                              <  1:3613862/100‑1                              GCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAAC                                                                              <  1:984198/100‑1                              GCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGAC                                                                              <  2:3898353/100‑1                               CCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTATGTCGGATGCGGCGTAACCGCCTTATCCGACC                                                                             <  2:3707299/100‑1                               CCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACC                                                                             <  2:3817755/100‑1                                CGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACC                                                                             <  1:4169082/99‑1                                CGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCACCTTATCCAACCT                                                                            <  1:1128719/100‑1                                   TTGCTTGATGCGACGCTCGCCCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGTATGTCGGATGCGGCGTAACCGCCTTATCCGAC                                                                              <  1:3152020/95‑1                                       CTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGGGT                                                                     >  1:1168476/1‑100                                           TGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGGGTGGAG                                                                 <  2:4250779/100‑1                                                                     CTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATA                                       <  2:1168480/100‑1                                                                            cttccgatcTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCG                                <  2:1663101/91‑1                                                                                      GCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGagatcggaag                      >  1:1663094/1‑90                                                                                                 gctcTCGGATGCGGCGTACCCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC               <  1:3874982/92‑1                                                                                                    GTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGCGCAGTTCACAGCGGTGTAGGCCTGATAAGGCGCGCCAGCCTCGCATCAGGCAACCGG         >  1:407365/1‑99                                                                                                     TCGGATGCGGCGTAACCGCCTTATCTAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCAACC           >  1:4150961/1‑96                                                                                                      CGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTT      >  2:4110076/1‑100                                                                                                       gtATGCGGCGTAACCGCCTTAGCCAACCTACGGGGTGGGGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  2:1288061/98‑1                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGCGCACTTCACAGCGGGGTAGGCCTGCTAAGACGCACCAGCATCGCATCACGCCACCG          >  1:838658/1‑95                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTcg     >  1:2547207/1‑98                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     >  2:2028399/1‑100                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  2:89770/100‑1                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  1:1340069/100‑1                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  2:1463994/100‑1                                                                                                       GGATGCCGCGTAACCGCCTTGTCCCACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG         <  1:1870813/96‑1                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGTACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG    <  1:3097893/100‑1                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG    <  1:500883/100‑1                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG    <  1:1460846/100‑1                                                                                                         ATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGG   <  2:954839/100‑1                                                                                                         ATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGG   <  2:250451/100‑1                                                                                                         ATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGGAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGG   <  1:3999021/100‑1                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  2:2814788/100‑1                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  >  2:2231367/1‑100                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  >  1:50530/1‑100                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  1:3461136/97‑1                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGC  >  1:1656415/1‑100                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGCTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCAACCGGCTGGGGC  >  1:1447781/1‑100                                                                                                                                                                                                               TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304548‑2304653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggatGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  NC_000913/2304782‑2304684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.