New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2593024	NA (NA)	12 (0.080)	8/164	NT	NA	noncoding (47/83 nt)	REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 2593056	NA (NA)					noncoding (79/83 nt)	REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences

CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2592926‑2593024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTCTTCG  <  NC_000913/2593056‑2592952                                                                                                                                                                                                              CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATG                                                                                                          <  1:1992851/100‑1   ACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCC                                                                                                        >  2:1119888/1‑100   ACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCC                                                                                                        >  1:716128/1‑100    CGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCT                                                                                                       <  2:1934974/100‑1       CTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGAT                                                                                                    <  2:564482/100‑1       CTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGACAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGAT                                                                                                    >  1:2816195/1‑100        TGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATn                                                                                                   <  1:401255/100‑2            CGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATACGAC                                                                                               >  2:4174066/1‑100                              AGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCGTGAGCGTCGCATCAG                                                                             <  1:1124991/100‑1                               tctGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGG                                                                            <  1:409569/97‑1                                  gcAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCAT                                                                         <  1:2886038/98‑1                                  GTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGTTGAACGATGCCTGATAAGACGCGTGAGCTTCGCATCAGGCgt                                                                         <  2:2973282/100‑3                                  GTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGaga                                                                         >  2:409570/1‑97                                  GTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCAT                                                                         <  1:4062039/100‑1                                  GTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCAT                                                                         <  2:2032917/100‑1                                  GTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGATGAACGATGCCTGATAAGACGCGTGAGCCTCGCATCAGGCct                                                                         <  2:2973395/100‑3                                   TAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCATC                                                                        <  1:423350/100‑1                                      GCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCATCGT                                                                      <  1:1884659/99‑1                                       CTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCATCGTTC                                                                    <  1:774006/100‑1                                        TGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCA                                                                   <  1:280916/100‑1                                                                                                     CCTGATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTC      >  2:3846318/1‑100                                                                                                      CTGATAAGACGCGTGAGCGTCGCATCAGGCATCATTCACCATTGCCGGATGCGGCGTTAACGCCTTATCAGGACTACGGTTGAGCACTCAGCTTACTac      >  1:1725874/1‑97                                                                                                       TGATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTCTT    >  2:4087065/1‑100                                                                                                        GATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTCTTC   <  2:2855699/100‑1                                                                                                        GATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTCTTC   <  2:2348440/100‑1                                                                                                         ATAAGACGCGTGAGCGTCGCAGCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTCTTCG  <  2:908778/100‑1                                                                                                                                                                                                              CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2592926‑2593024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGTGAGCGTCGCATCAGGCATCGTTCACCATTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGTTGAGCACTCAGCTTACTTCTTCG  <  NC_000913/2593056‑2592952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.