New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2593024NA (NA)12 (0.080) 8/164 NT NA noncoding (47/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2593056 NA (NA)noncoding (79/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 190 total aligned reads displayed.

CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAGCGC  >  NC_000913/2592926‑2593122
                                                                                                  |                                                                                                  
cgacgaCTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATg                                                                                                   <  1:1992851‑M1/100‑2 (MQ=255)
  acgacTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcc                                                                                                 >  2:1119888‑M1/1‑97 (MQ=255)
      cTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgat                                                                                             <  2:564482‑M1/100‑8 (MQ=255)
      cTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGACAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgat                                                                                             >  1:2816195‑M1/1‑93 (MQ=255)
       tGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgatn                                                                                            <  1:401255‑M1/100‑9 (MQ=255)
       tGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATg                                                                                            <  2:41555/100‑1 (MQ=255)
        ggCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           >  1:3753383/1‑100 (MQ=255)
        ggCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           <  2:773100/100‑1 (MQ=255)
        ggCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           <  2:1751776/100‑1 (MQ=255)
         gCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           >  1:3294510/1‑99 (MQ=255)
          ccGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGa                                                                                         <  1:4242497/100‑1 (MQ=255)
            gAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACg                                                                                       >  2:4329765/1‑100 (MQ=255)
            cgatctggATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACg                                                                                       <  2:728464/94‑1 (MQ=255)
             aaaaaGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGc                                                                                      >  1:816435/1‑100 (MQ=255)
               aaaGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTc                                                                                    <  2:2444265/100‑1 (MQ=255)
                  ngATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACgagatcg                                                                                 >  1:728463/2‑94 (MQ=255)
                  ggATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcg                                                                                 >  2:2140073/1‑100 (MQ=255)
                      cAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTc                                                                             <  2:1774570/100‑1 (MQ=255)
                       aaCCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCt                                                                            >  1:2956352/1‑100 (MQ=255)
                        aCCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCtt                                                                           >  1:2924431/1‑100 (MQ=255)
                          cGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGCTGCGACGCTCACGCGTCTTAT                                                                         <  2:908778‑M2/100‑1 (MQ=255)
                           gaagaaGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATC                                                                        <  2:2348440‑M2/100‑1 (MQ=255)
                            aagaagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCA                                                                       >  2:4087065‑M2/1‑100 (MQ=255)
                             agaagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgatgcgacgcgtgagcgtcgcatcag                                                                      <  1:1124991‑M1/100‑31 (MQ=255)
                              tctgtaaGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcagg                                                                     <  1:409569‑M1/97‑32 (MQ=255)
                              gtagtaAGCTGAGTGCTCAACCGTAGTCCTGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAATGATGCCTGATGCGACGCTCACGCGTCTTATCAG                                                                      >  1:1725874‑M2/3‑99 (MQ=255)
                              gaagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGG                                                                     >  2:3846318‑M2/1‑100 (MQ=255)
                                agTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGcc                                                                   <  2:2275705/100‑1 (MQ=255)
                                agTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGcc                                                                   >  1:863984/1‑100 (MQ=255)
                                 gcaagcTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcaggcat                                                                  <  1:2886038‑M1/98‑35 (MQ=255)
                                 gTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCa                                                                  >  1:3218762/1‑100 (MQ=255)
                                 gTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCa                                                                  <  1:4366923/100‑1 (MQ=255)
                                 gTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGATGAACGATgcctgataagacgcgtgagcctcgcatcaggcct                                                                  <  2:2973395‑M1/100‑35 (MQ=255)
                                  tAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcaggcatc                                                                 <  1:423350‑M1/100‑36 (MQ=255)
                                  tAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCac                                                                 <  1:4188942/100‑2 (MQ=255)
                                   aaGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAgg                                                                <  1:1867306/100‑1 (MQ=255)
                                   aaGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAgg                                                                >  2:2921150/1‑100 (MQ=255)
                                   aaGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAgg                                                                >  2:3158411/1‑100 (MQ=255)
                                    aGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAgg                                                                >  1:1947632/1‑99 (MQ=255)
                                     gCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTa                                                              >  2:2012997/1‑100 (MQ=255)
                                        gAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  1:3157301/100‑1 (MQ=255)
                                        gAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  1:3442573/100‑1 (MQ=255)
                                          gTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTg                                                         <  2:3875376/100‑1 (MQ=255)
                                          gTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTg                                                         <  1:2501645/100‑1 (MQ=255)
                                          gTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTg                                                         <  1:1252407/100‑1 (MQ=255)
                                           tGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  1:118643/97‑1 (MQ=255)
                                            gCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTc                                                       >  2:1824055/1‑100 (MQ=255)
                                            gCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTc                                                       >  2:2955949/1‑100 (MQ=255)
                                            gCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTc                                                       >  2:4034044/1‑100 (MQ=255)
                                             cTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCt                                                      <  2:3566955/100‑1 (MQ=255)
                                             cTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCt                                                      >  2:2410205/1‑100 (MQ=255)
                                              tCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCtt                                                     >  1:1380805/1‑100 (MQ=255)
                                                 aCCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTa                                                  <  2:4169490/100‑1 (MQ=255)
                                                 aCCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTa                                                  <  2:117355/100‑1 (MQ=255)
                                                  accattgCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAc                                                 >  1:3478563/7‑100 (MQ=25)
                                                   ccattgCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAca                                                >  1:59801/6‑100 (MQ=25)
                                                    gTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAcat                                               <  2:3687842/100‑1 (MQ=255)
                                                    cattgCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAcat                                               >  1:3854578/5‑100 (MQ=25)
                                                       ggCCGGATAAGGCGTTAACGCCGCATCGGGCAATGGTGAACGATGCATGATGCGACGCTCACGGGTCTTATCAGGACAGGTAATCTGTCTTTTAcattat                                            >  1:3416075/1‑100 (MQ=25)
                                                       ggCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAcatcat                                            <  1:4156882/100‑1 (MQ=255)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAcacca                                             >  1:772751/1‑98 (MQ=25)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  1:3002490/1‑100 (MQ=37)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  1:1481923/1‑100 (MQ=37)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  2:164151/1‑100 (MQ=37)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACAATGCCTGATGAGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  2:3085627/1‑100 (MQ=25)
                                                        gCCGGATGCGGCGTTAAAGCCTTATCCGGGAATGGTGAACGATGCCTGATGCGACGATCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  1:1052520/1‑100 (MQ=25)
                                                           ggATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCa                                        >  1:2479260/1‑100 (MQ=255)
                                                           ggATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCa                                        >  2:2486947/1‑100 (MQ=255)
                                                            gATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCaa                                       >  2:2605808/1‑100 (MQ=255)
                                                              tAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATc                                     <  2:660476/100‑1 (MQ=255)
                                                                aGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCCGGCCAGGTAATCTGTCTTTTACATCATTTCCATcac                                   >  2:1909102/1‑100 (MQ=255)
                                                                aGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATcac                                   <  2:3777956/100‑1 (MQ=255)
                                                                 ggCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATcaca                                  <  1:1583865/100‑1 (MQ=255)
                                                                 ggCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATcaca                                  <  2:1272291/100‑1 (MQ=255)
                                                                   cGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCAcatc                                >  2:4185217/1‑100 (MQ=255)
                                                                   cGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCAcatc                                >  1:2764150/1‑100 (MQ=255)
                                                                     ttAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCAcatcat                              <  1:942102/100‑1 (MQ=255)
                                                                       aaCGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCGATCAcatcatca                            <  2:2906268/100‑1 (MQ=255)
                                                                       aaCGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCAcatcatca                            <  1:2022036/100‑1 (MQ=255)
                                                                         cgccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACatcatcatc                          >  1:2616573/1‑100 (MQ=255)
                                                                          gccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCg                         <  2:2816212/100‑1 (MQ=255)
                                                                           ccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTGATCTGTCTTTTACATCATTTCAATCACATCATCATCGc                        >  2:4404493/1‑100 (MQ=255)
                                                                           ccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGc                        >  1:890644/1‑100 (MQ=255)
                                                                           ccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGc                        >  1:3743400/1‑100 (MQ=255)
                                                                             gcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCa                      >  1:3343319/1‑100 (MQ=255)
                                                                                 ccGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCt                  >  1:1877003/1‑100 (MQ=255)
                                                                                 ccGGCAATGGTGAACGATGCCTGATGCGACGCCCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGc                   >  1:1876717/1‑99 (MQ=255)
                                                                                  cGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCtt                 >  1:4102007/1‑100 (MQ=255)
                                                                                        tGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGcc           >  2:3214984/1‑100 (MQ=255)
                                                                                        tGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGcc           >  2:2223290/1‑100 (MQ=255)
                                                                                           tGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGTCCAGTTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCa          >  1:1746980/1‑98 (MQ=255)
                                                                                           tGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactca        <  1:280916‑M2/100‑61 (MQ=255)
                                                                                            gAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcag       <  1:774006‑M2/100‑62 (MQ=255)
                                                                                            gAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACtt       >  1:3242326/1‑100 (MQ=255)
                                                                                              aCGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcagc      <  1:1884659‑M2/99‑63 (MQ=255)
                                                                                               cGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAgc    <  1:3587435/100‑1 (MQ=255)
                                                                                                gATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAgcg   >  2:1483203/1‑100 (MQ=255)
                                                                                                gATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAgcg   >  2:3128262/1‑100 (MQ=255)
                                                                                                 aTGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcagcttac  <  2:2032917‑M2/100‑67 (MQ=255)
                                                                                                 aTGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcagcttac  <  1:4062039‑M2/100‑67 (MQ=255)
                                                                                                  |                                                                                                  
CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAGCGC  >  NC_000913/2592926‑2593122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.