| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2835067 = | NA (NA) | 15 (0.100) | 8/164 | NT | NA | noncoding (1/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2835099 = | NA (NA) | noncoding (33/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AACGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2835172‑2835067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT > NC_000913/2835099‑2835197 AACGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCA < 1:2501755/100‑1AACGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCA < 1:299652/100‑1AACGTGTTGCATTCGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCA > 2:2997102/1‑100 ACGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCAT < 2:4384080/100‑1 ACGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCAT < 1:3343723/100‑1 CGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATC < 2:639876/100‑1 CGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATC < 2:2777292/100‑1 GTGTTGCGTTTGGACACCATTGCCGGATGCGGCGTAAAGGCCTTCTCCGGCCTACACATGCG‑TGCCCGTAGGTCGGATAAGGCGCGCCAGCGTCGCATCC > 1:2313538/1‑100 GTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCC < 2:306593/100‑1 GTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGA > 2:2318458/1‑100 GTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGA < 2:2912273/100‑1 GTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTAGGATAAGACGCGCCAGCGTCGCACCCGA > 2:2424734/1‑100 TTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC < 1:4362278/100‑1 TTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACACGCCAGCGTCGCATCCGA > 2:2402018/1‑99 CGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGT > 2:3205744/1‑100 CCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCC > 2:2677064/1‑100 CCCCGTAGGTCGGATAAGACGCGCCAACGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCC > 2:2678303/1‑100 GGTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCAGCATCCGGCCATGGTGTCCAAATG > 1:1522673/1‑98 GTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAA > 2:532651/1‑100 GTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAA > 2:2427626/1‑100 CGGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACA > 2:3187813/1‑100 GGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACAC > 2:1922184/1‑100 GGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACAC > 2:4207601/1‑100 GGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACAC > 1:686502/1‑100 GGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACAC > 2:2866200/1‑100 GGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CCCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACAC > 2:2405318/1‑100 GATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACG > 1:2079080/1‑100 CGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCG > 2:3129345/1‑100 CGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCG > 2:3129179/1‑100 ATCCGACCTACGGGGA‑CGCATGTGTTGGCCGGATAAGACGTTTACGCCGCATCCGGCAATGGTGTCCAAACGCACCACGTTTTGTCCGTTCTGGACTTC > 1:3424841/1‑99 ATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCA < 2:1452596/100‑1 ATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCA > 1:3323851/1‑100 TCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAC < 1:191481/100‑1 TCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAC > 1:2732935/1‑100 TCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAC < 2:1310892/100‑1 CCGACCTACGTGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGCAATTGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACC < 1:1380046/100‑1 CCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACC > 1:1602539/1‑100 CGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCC < 2:3111680/100‑1 CGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCC < 1:3040215/100‑1 GACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCG < 1:1646441/100‑1 GACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCG < 2:4356078/100‑1 ACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGC < 1:267641/100‑1 CCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT < 1:575704/100‑1 AACGTGTTGCATTTGGACACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCG‑TCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2835172‑2835067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT > NC_000913/2835099‑2835197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |