New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2835067 =NA (NA)15 (0.100) 8/164 NT NA noncoding (1/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2835099 = NA (NA)noncoding (33/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 248 total aligned reads displayed.

GACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAA  >  NC_000913/2834968‑2835166
                                                                                                   |                                                                                                    
gACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATg                                                                                                      >  1:764667/1‑100 (MQ=255)
 gcgggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGt                                                                                                     <  1:267641‑M1/2‑1 (MQ=255)
 aCCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGt                                                                                                     <  1:1163306/100‑1 (MQ=255)
  cgggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTc                                                                                                    <  2:4356078‑M1/3‑1 (MQ=255)
   gggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCg                                                                                                   <  2:3111680‑M1/4‑1 (MQ=255)
   cAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAGGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCg                                                                                                   <  1:2594134/100‑1 (MQ=255)
   cAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCg                                                                                                   <  2:100415/100‑1 (MQ=255)
    ggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCgg                                                                                                  >  1:1602539‑M1/96‑100 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGCTCGGATGAAAGAGGCATTTTGACTGTTGAAAACATTGCCGATGTAGATGGGCTACTGTGCCTAAAATGTCgg                                                                                                  <  1:456458/100‑1 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCgg                                                                                                  <  2:2174757/100‑1 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCgg                                                                                                  <  2:3523426/100‑1 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCg                                                                                                   <  2:2766186/99‑1 (MQ=255)
     gtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGa                                                                                                 <  1:191481‑M1/6‑1 (MQ=255)
     gtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGa                                                                                                 <  2:1310892‑M1/6‑1 (MQ=255)
     gtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGa                                                                                                 >  1:2732935‑M1/95‑100 (MQ=255)
     gCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAGTGTCGGa                                                                                                 >  2:2050046/1‑100 (MQ=255)
     gCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGa                                                                                                 >  1:1114418/1‑100 (MQ=255)
     gCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGa                                                                                                 <  1:23305/100‑1 (MQ=255)
      tgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGAt                                                                                                >  1:3323851‑M1/94‑100 (MQ=255)
       ttCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTTGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATg                                                                                               <  1:1932935/100‑1 (MQ=255)
        tCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGCGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGc                                                                                              >  1:2157022/1‑100 (MQ=255)
        tCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGc                                                                                              <  1:2924560/100‑1 (MQ=255)
          gcgcCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGa                                                                                            >  2:783291/1‑100 (MQ=255)
          gcgcCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGa                                                                                            <  1:4030620/100‑1 (MQ=255)
            gcCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACg                                                                                          >  1:2833182/1‑100 (MQ=255)
                  gtgGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGgcg                                                                                    >  1:3392364/1‑100 (MQ=255)
                  cggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGgcg                                                                                    >  2:3129345‑M1/82‑100 (MQ=255)
                   tgGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGgcgc                                                                                   >  2:1979329/1‑100 (MQ=255)
                      tCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGGTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTc                                                                                <  1:2868774/100‑1 (MQ=255)
                       cAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCt                                                                               >  2:1129683/1‑100 (MQ=255)
                       cAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCt                                                                               >  1:1841947/1‑100 (MQ=255)
                         gTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTa                                                                             >  2:2209828/1‑100 (MQ=255)
                          tGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTAt                                                                            >  1:2112/1‑100 (MQ=255)
                           gAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATGGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATc                                                                           <  1:4162199/100‑1 (MQ=255)
                            gtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGGCGCGTCTTATcc                                                                          >  2:4207601‑M1/72‑100 (MQ=255)
                            aGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATcc                                                                          <  1:1318371/100‑1 (MQ=255)
                            aGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATcc                                                                          <  2:2472121/100‑1 (MQ=255)
                             ggATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCg                                                                         >  2:3618150/1‑100 (MQ=255)
                                  catttggacaccatggccggatgctgcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGGCGCGTCTTATCCGAcc                                                                      >  1:1522673‑M1/66‑98 (MQ=255)
                                    aTGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACg                                                                  <  2:3287215/100‑1 (MQ=255)
                                      gAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACggg                                                                >  2:73093/1‑100 (MQ=255)
                                       ggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACgggg                                                               >  2:2677064‑M1/61‑100 (MQ=255)
                                       aaaGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACgggg                                                               >  2:1830728/1‑100 (MQ=255)
                                        aaGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGa                                                              >  1:3537718/1‑100 (MQ=255)
                                          gagGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACg                                                           >  2:123580/1‑100 (MQ=255)
                                           agGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGc                                                          <  2:141617/100‑1 (MQ=255)
                                            ggCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACgaa                                                         >  2:2280132/1‑98 (MQ=255)
                                              cATTTGGATTGTTGAAATCATTGCCGATGTAGGTGGGCTACGGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCAtg                                                       <  2:1455023/100‑1 (MQ=255)
                                              cATTTGGATTGTTGAAAACATTGCCGATGTCGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTATTATCCGACCTACGGGGACGCAt                                                        >  1:23089/1‑99 (MQ=255)
                                              cATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCAtg                                                       <  2:835016/100‑1 (MQ=255)
                                              cATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCAACGGGGACGCAta                                                       >  2:3585015/1‑99 (MQ=255)
                                               aTTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCAtgt                                                      >  2:581252/1‑100 (MQ=255)
                                                tttGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCAtgtg                                                     >  1:2077741/1‑100 (MQ=255)
                                                        gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCTgg                                             <  1:3298378/100‑1 (MQ=255)
                                                        gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCgg                                             <  1:1264471/100‑1 (MQ=255)
                                                        gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCgg                                             >  2:2620793/1‑100 (MQ=255)
                                                          tgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGAt                                           <  2:4128866/100‑1 (MQ=255)
                                                           gAAAACATTGCCGATGTGGGTGGGCGACGGTGCCTACAATGACGGATGCGACGCTGGCGGGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATa                                          <  1:1646289/100‑1 (MQ=25)
                                                           gAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATa                                          <  1:640095/100‑1 (MQ=255)
                                                           gAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATa                                          >  2:2147878/1‑100 (MQ=255)
                                                             aaaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAg                                        >  2:3994845/1‑100 (MQ=255)
                                                              aaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTTGGCCGGATAAgg                                       <  2:1575947/100‑1 (MQ=255)
                                                               aCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGc                                      <  2:369351/100‑1 (MQ=255)
                                                                  ttGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGtt                                   <  2:187374/100‑1 (MQ=255)
                                                                    gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTa                                 >  1:683609/1‑100 (MQ=255)
                                                                    gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTa                                 <  1:1218626/100‑1 (MQ=255)
                                                                    gCCGATGTAGGTGGGCTACTGTGCCTAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCGACCTGCGGGGACGCAGGCGTAGGCCGCATAGGGCGTTTa                                 >  1:3750333/1‑100 (MQ=25)
                                                                     ccGATGTAGGTGTGCTACTGTGCCTAAAATGTCGGATGCGAAGCTGGCGCGTCTTATCCGAACTACGGGGACGCATGTGTAGGCCGGATATAGCGTTTAc                                >  1:3727503/1‑100 (MQ=38)
                                                                     ccGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAc                                <  1:3411635/100‑1 (MQ=255)
                                                                     ccGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAc                                >  2:2935123/1‑100 (MQ=255)
                                                                       gATGTAGGTGGGCTACTGTGCCTAAAGTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgc                              >  2:2682531/1‑100 (MQ=255)
                                                                       gATGTAGGTAGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCTCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGCATAAGGCGTTTAcg                               <  1:73093/99‑1 (MQ=255)
                                                                        gatctggTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                             <  1:2152652/95‑1 (MQ=255)
                                                                        atatAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACTCTGGCGCGTCTTATCCGACCTATGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                             <  1:4390179/97‑1 (MQ=255)
                                                                        aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgc                              <  2:553720/99‑1 (MQ=255)
                                                                         tGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgccg                            <  1:4271868/100‑1 (MQ=255)
                                                                         tGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgccg                            >  2:2871559/1‑100 (MQ=255)
                                                                          gTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgccgc                           <  2:2319952/100‑1 (MQ=255)
                                                                          gTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgccgc                           <  2:1745331/100‑1 (MQ=255)
                                                                           tAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCa                          >  1:3947330/1‑100 (MQ=255)
                                                                            aGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCAt                         >  2:383610/1‑100 (MQ=255)
                                                                             ggTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATc                        <  2:3408875/100‑1 (MQ=255)
                                                                              gTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                       >  1:1774543/1‑100 (MQ=255)
                                                                               tGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                      <  1:3080238/100‑1 (MQ=255)
                                                                                gggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATGCGGCGTAAAcgccttatccg                      <  2:480981/99‑8 (MQ=21)
                                                                                acaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                      >  2:3205744‑M1/20‑100 (MQ=255)
                                                                                  gCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                    <  2:1711967/99‑1 (MQ=255)
                                                                                      cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg               <  2:2809638/100‑1 (MQ=255)
                                                                                      cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg               <  1:2516694/100‑1 (MQ=255)
                                                                                      cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg               <  2:652237/100‑1 (MQ=255)
                                                                                        gtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtg             >  1:1969127/1‑100 (MQ=255)
                                                                                        gtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtg             >  2:3256925/1‑100 (MQ=255)
                                                                                          gCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTc           >  2:298938/1‑100 (MQ=255)
                                                                                           ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc          <  1:1739735/100‑1 (MQ=255)
                                                                                            cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATggagatcg         >  1:1381790/1‑94 (MQ=255)
                                                                                            cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCa         >  1:574146/1‑100 (MQ=255)
                                                                                             tAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaa        >  2:2395499/1‑100 (MQ=255)
                                                                                               aaaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAAt      <  1:3610300/100‑1 (MQ=255)
                                                                                                actGTCGGATGCGAGCTTGGCGCGCCTTACCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCTTCATCCGGCAATGGTGTCCAAAt      <  1:3037140/97‑1 (MQ=18)
                                                                                                   GTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCaa  <  1:4362278‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                    
GACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAA  >  NC_000913/2834968‑2835166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.