New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2835067 =NA (NA)15 (0.100) 8/164 NT NA noncoding (1/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2835099 = NA (NA)noncoding (33/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 248 total aligned reads displayed.

GACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAA  >  NC_000913/2834968‑2835166
                                                                                                   |                                                                                                    
gACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATg                                                                                                      >  1:764667/1‑100 (MQ=255)
 gcgggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGt                                                                                                     <  1:267641‑M1/2‑1 (MQ=255)
 aCCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGt                                                                                                     <  1:1163306/100‑1 (MQ=255)
  cgggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTc                                                                                                    <  2:4356078‑M1/3‑1 (MQ=255)
   gggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCg                                                                                                   <  2:3111680‑M1/4‑1 (MQ=255)
   cAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAGGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCg                                                                                                   <  1:2594134/100‑1 (MQ=255)
   cAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCg                                                                                                   <  2:100415/100‑1 (MQ=255)
    ggtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCgg                                                                                                  >  1:1602539‑M1/96‑100 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGCTCGGATGAAAGAGGCATTTTGACTGTTGAAAACATTGCCGATGTAGATGGGCTACTGTGCCTAAAATGTCgg                                                                                                  <  1:456458/100‑1 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCgg                                                                                                  <  2:2174757/100‑1 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCgg                                                                                                  <  2:3523426/100‑1 (MQ=255)
    aGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCg                                                                                                   <  2:2766186/99‑1 (MQ=255)
     gtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGa                                                                                                 <  1:191481‑M1/6‑1 (MQ=255)
     gtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGa                                                                                                 <  2:1310892‑M1/6‑1 (MQ=255)
     gtgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGa                                                                                                 >  1:2732935‑M1/95‑100 (MQ=255)
     gCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAGTGTCGGa                                                                                                 >  2:2050046/1‑100 (MQ=255)
     gCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGa                                                                                                 >  1:1114418/1‑100 (MQ=255)
     gCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGa                                                                                                 <  1:23305/100‑1 (MQ=255)
      tgaagtccagaacggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGAt                                                                                                >  1:3323851‑M1/94‑100 (MQ=255)
       ttCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTTGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATg                                                                                               <  1:1932935/100‑1 (MQ=255)
        tCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGCGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGc                                                                                              >  1:2157022/1‑100 (MQ=255)
        tCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGc                                                                                              <  1:2924560/100‑1 (MQ=255)
          gcgcCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGa                                                                                            >  2:783291/1‑100 (MQ=255)
          gcgcCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGa                                                                                            <  1:4030620/100‑1 (MQ=255)
            gcCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACg                                                                                          >  1:2833182/1‑100 (MQ=255)
                  gtgGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGgcg                                                                                    >  1:3392364/1‑100 (MQ=255)
                  cggataaaacgtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGgcg                                                                                    >  2:3129345‑M1/82‑100 (MQ=255)
                   tgGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGgcgc                                                                                   >  2:1979329/1‑100 (MQ=255)
                      tCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGGTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTc                                                                                <  1:2868774/100‑1 (MQ=255)
                       cAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCt                                                                               >  2:1129683/1‑100 (MQ=255)
                       cAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCt                                                                               >  1:1841947/1‑100 (MQ=255)
                         gTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTa                                                                             >  2:2209828/1‑100 (MQ=255)
                          tGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTAt                                                                            >  1:2112/1‑100 (MQ=255)
                           gAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATGGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATc                                                                           <  1:4162199/100‑1 (MQ=255)
                            gtgttgcatttggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGGCGCGTCTTATcc                                                                          >  2:4207601‑M1/72‑100 (MQ=255)
                            aGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATcc                                                                          <  1:1318371/100‑1 (MQ=255)
                            aGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATcc                                                                          <  2:2472121/100‑1 (MQ=255)
                             ggATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCg                                                                         >  2:3618150/1‑100 (MQ=255)
                                  catttggacaccatggccggatgctgcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGGCGCGTCTTATCCGAcc                                                                      >  1:1522673‑M1/66‑98 (MQ=255)
                                    aTGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACg                                                                  <  2:3287215/100‑1 (MQ=255)
                                      gAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACggg                                                                >  2:73093/1‑100 (MQ=255)
                                       ggacaccattgccggatgcggcgtaaacgccttatccggcctacacatgcgtccccgtagGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACgggg                                                               >  2:2677064‑M1/61‑100 (MQ=255)
                                       aaaGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACgggg                                                               >  2:1830728/1‑100 (MQ=255)
                                        aaGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGa                                                              >  1:3537718/1‑100 (MQ=255)
                                          gagGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑Cg                                                           >  2:123580/1‑100 (MQ=255)
                                           agGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGc                                                          <  2:141617/100‑1 (MQ=255)
                                            ggCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑Cgaa                                                         >  2:2280132/1‑98 (MQ=255)
                                              cATTTGGATTGTTGAAATCATTGCCGATGTAGGTGGGCTACGGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCAtg                                                       <  2:1455023/100‑1 (MQ=255)
                                              cATTTGGATTGTTGAAAACATTGCCGATGTCGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTATTATCCGACCTACGGGGA‑CGCAt                                                        >  1:23089/1‑99 (MQ=255)
                                              cATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCAtg                                                       <  2:835016/100‑1 (MQ=255)
                                              cATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCAACGGGGA‑CGCAta                                                       >  2:3585015/1‑99 (MQ=255)
                                               aTTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCAtgt                                                      >  2:581252/1‑100 (MQ=255)
                                                tttGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCAtgtg                                                     >  1:2077741/1‑100 (MQ=255)
                                                        gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCTgg                                             <  1:3298378/100‑1 (MQ=255)
                                                        gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCgg                                             <  1:1264471/100‑1 (MQ=255)
                                                        gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCgg                                             >  2:2620793/1‑100 (MQ=255)
                                                          tgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGAt                                           <  2:4128866/100‑1 (MQ=255)
                                                           gAAAACATTGCCGATGTGGGTGGGCGACGGTGCCTACAATGACGGATGCGACGCTGGCGGGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATa                                          <  1:1646289/100‑1 (MQ=25)
                                                           gAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATa                                          <  1:640095/100‑1 (MQ=255)
                                                           gAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATa                                          >  2:2147878/1‑100 (MQ=255)
                                                             aaaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAg                                        >  2:3994845/1‑100 (MQ=255)
                                                              aaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTTGGCCGGATAAgg                                       <  2:1575947/100‑1 (MQ=255)
                                                               aCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGc                                      <  2:369351/100‑1 (MQ=255)
                                                                  ttGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGtt                                   <  2:187374/100‑1 (MQ=255)
                                                                    gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTa                                 >  1:683609/1‑100 (MQ=255)
                                                                    gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTa                                 <  1:1218626/100‑1 (MQ=255)
                                                                    gCCGATGTAGGTGGGCTACTGTGCCTAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCGACCTGCGGGGA‑CGCAGGCGTAGGCCGCATAGGGCGTTTa                                 >  1:3750333/1‑100 (MQ=25)
                                                                     ccGATGTAGGTGTGCTACTGTGCCTAAAATGTCGGATGCGAAGCTGGCGCGTCTTATCCGAACTACGGGGA‑CGCATGTGTAGGCCGGATATAGCGTTTAc                                >  1:3727503/1‑100 (MQ=38)
                                                                     ccGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAc                                <  1:3411635/100‑1 (MQ=255)
                                                                     ccGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAc                                >  2:2935123/1‑100 (MQ=255)
                                                                       gATGTAGGTGGGCTACTGTGCCTAAAGTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgc                              >  2:2682531/1‑100 (MQ=255)
                                                                       gATGTAGGTAGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCTCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGCATAAGGCGTTTAcg                               <  1:73093/99‑1 (MQ=255)
                                                                        gatctggTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                             <  1:2152652/95‑1 (MQ=255)
                                                                        atatAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACTCTGGCGCGTCTTATCCGACCTATGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                             <  1:4390179/97‑1 (MQ=255)
                                                                        aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgc                              <  2:553720/99‑1 (MQ=255)
                                                                         tGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgccg                            <  1:4271868/100‑1 (MQ=255)
                                                                         tGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgccg                            >  2:2871559/1‑100 (MQ=255)
                                                                          gTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgccgc                           <  2:2319952/100‑1 (MQ=255)
                                                                          gTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTAcgccgc                           <  2:1745331/100‑1 (MQ=255)
                                                                           tAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCa                          >  1:3947330/1‑100 (MQ=255)
                                                                            aGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCAt                         >  2:383610/1‑100 (MQ=255)
                                                                             ggTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATc                        <  2:3408875/100‑1 (MQ=255)
                                                                              gTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                       >  1:1774543/1‑100 (MQ=255)
                                                                               tGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                      <  1:3080238/100‑1 (MQ=255)
                                                                                gggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATGCGGCGTAAAcgccttatccg                      <  2:480981/99‑8 (MQ=21)
                                                                                acaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                      >  2:3205744‑M1/20‑100 (MQ=255)
                                                                                  gCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                    <  2:1711967/99‑1 (MQ=255)
                                                                                      cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg               <  2:2809638/100‑1 (MQ=255)
                                                                                      cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg               <  1:2516694/100‑1 (MQ=255)
                                                                                      cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg               <  2:652237/100‑1 (MQ=255)
                                                                                        gtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtg             >  1:1969127/1‑100 (MQ=255)
                                                                                        gtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtg             >  2:3256925/1‑100 (MQ=255)
                                                                                          gCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTc           >  2:298938/1‑100 (MQ=255)
                                                                                           ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc          <  1:1739735/100‑1 (MQ=255)
                                                                                            cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATggagatcg         >  1:1381790/1‑94 (MQ=255)
                                                                                            cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCa         >  1:574146/1‑100 (MQ=255)
                                                                                             tAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaa        >  2:2395499/1‑100 (MQ=255)
                                                                                               aaaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAAt      <  1:3610300/100‑1 (MQ=255)
                                                                                                actGTCGGATGCGAGCTTGGCGCGCCTTACCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCTTCATCCGGCAATGGTGTCCAAAt      <  1:3037140/97‑1 (MQ=18)
                                                                                                   GTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCaa  <  1:4362278‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                    
GACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATTTGGATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAA  >  NC_000913/2834968‑2835166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.