| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3625629 = | NA (NA) | 20 (0.140) | 13/166 | NT | 15.5% | noncoding (41/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3625675 = | 109 (0.740) | intergenic (+161/+4) | yhhI/yhhJ | putative transposase/putative ABC transporter permease | |||||
ATTTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3625733‑3625629‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaattGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCCAGA > NC_000913/3625675‑3625773 ATTTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCAATGCGTAAGCTTATAGGGACTACGCATCGGTG < 2:2805512/100‑1 TTTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGC < 1:2089762/100‑1 TTTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGC < 1:3429578/100‑1 TTTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGC > 2:368360/1‑100 TTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCA < 1:2348223/100‑1 TTTCACCATTGCGCTGCTGTGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAA > 2:1898665/1‑100 TTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAA > 2:4409756/1‑100 TTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAAT < 1:171545/100‑1 ttcctgaatCGCAGCAGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT > 1:1999781/10‑100 TCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT > 1:2588352/1‑100 TCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT < 2:342164/100‑1 GGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:2143431/1‑100 GGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA > 1:782220/1‑99 GCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGC > 2:3291753/1‑100 CGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 2:4294670/1‑100 ATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTCACGCCATCGTCCCAATCGTCTTCCTGAATCCCAGCAGCGC > 1:2432534/1‑96 ATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAA > 2:295882/1‑100 TTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAA > 2:336188/1‑100 TGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAA > 1:3554172/1‑100 TGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAA > 1:2061697/1‑100 TGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAA > 2:1069585/1‑100 GCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAA > 2:4293040/1‑100 GCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAA > 2:3304949/1‑100 GCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAA > 2:857918/1‑100 GCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAA > 1:2872939/1‑100 GCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAA > 2:3284371/1‑99 CCCGATGCGTAAGCTTATAGGGACTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATG > 2:1588941/1‑100 CCCGATGCGTAAGCTTATAGGGACTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCCCAATGGTGAAAAATG > 2:4343877/1‑100 CCGATGCGTAAGCTTATAGGGACTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > 1:70695/1‑100 GATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCG > 1:3295184/1‑100 TAAGCTTATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCA > 1:871183/1‑100 TGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCG > 2:2655598/1‑100 GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGG < 1:2306393/100‑1 GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGG < 2:1979258/100‑1 GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGG > 2:2813068/1‑100 GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGG < 2:3195711/100‑1 GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGG < 1:4235434/100‑1 GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGG > 1:382066/1‑100 CAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCACTTGCCATCAGAGTCAGAAACTGCGGC > 2:4346752/1‑100 CAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGC < 1:2072356/100‑1 CAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGC > 2:121418/1‑100 AATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAACATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCC > 1:636154/1‑100 AATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCC < 2:3940018/100‑1 AATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCC < 1:2805495/100‑1 ATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCCA > 1:2606684/1‑100 ATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCCA > 2:1265331/1‑100 TTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCCAG < 1:2878252/100‑1 TGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCCAGA > 1:781922/1‑100 TGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCC < 1:829327/97‑1 ATTTTTCACCATTGCGCTGCTGCGATTCAGGAAGACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3625733‑3625629‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaattGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCCAATTGCCATCAGCGTCAGAAACTGCGGCCAGA > NC_000913/3625675‑3625773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |