BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3625629 =	NA (NA)	20 (0.140)	13/166	NT	15.5%	noncoding (41/82 nt)	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	3625675 =	109 (0.740)	20 (0.140)	13/166	NT	15.5%	intergenic (+161/+4)	yhhI/yhhJ	putative transposase/putative ABC transporter permease

Only 100 of 183 total aligned reads displayed.

GGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA  >  NC_000913/3625531‑3625728

ctggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacaa                                                                                                    <  1:2878252‑M1/2‑1 (MQ=255)

 tggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAt                                                                                                   >  2:1265331‑M1/98‑100 (MQ=255)

 tggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAt                                                                                                   >  1:2606684‑M1/98‑100 (MQ=255)

  ggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAtt                                                                                                  <  2:3940018‑M1/4‑1 (MQ=255)

  ggccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAtt                                                                                                  <  1:2805495‑M1/4‑1 (MQ=255)

  aCTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAAtt                                                                                                  <  2:609130/100‑1 (MQ=255)

   gccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTg                                                                                                 <  1:2072356‑M1/5‑1 (MQ=255)

   cTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATGCGGCCTAAAAACAACTAAGATTCAATAAATTg                                                                                                 <  1:20058/100‑1 (MQ=255)

   cTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTg                                                                                                 >  1:4386403/1‑100 (MQ=255)

   cTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTg                                                                                                 >  2:4285174/1‑100 (MQ=255)

    ccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGc                                                                                                <  1:2306393‑M1/6‑1 (MQ=255)

    ccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGc                                                                                                >  2:2813068‑M1/95‑100 (MQ=255)

    ccgcagtttctgacgctgatggcaattggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGc                                                                                                <  2:3195711‑M1/6‑1 (MQ=255)

     gAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGc                                                                                                <  1:4092983/99‑1 (MQ=255)

     gAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCa                                                                                               >  2:2365810/1‑100 (MQ=255)

      aGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAc                                                                                              <  2:3464122/100‑1 (MQ=255)

       gTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcc                                                                                             <  1:4085943/100‑1 (MQ=255)

        tATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCg                                                                                            <  2:4132640/100‑1 (MQ=255)

          tCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGAt                                                                                          >  2:1933817/1‑100 (MQ=255)

           cAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAGCAACTAAAATTCAATAAATTGCACCGATg                                                                                         >  1:2945126/1‑100 (MQ=255)

            aaaaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGc                                                                                        >  2:239203/1‑100 (MQ=255)

              aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCGGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGAGt                                                                                      >  1:274883/1‑100 (MQ=255)

              aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGt                                                                                      <  1:2462275/100‑1 (MQ=255)

              aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGt                                                                                      <  2:2284925/100‑1 (MQ=255)

               aaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTa                                                                                     >  2:1993304/1‑100 (MQ=255)

                   cGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc                                                                                 >  2:3664547/1‑100 (MQ=255)

                   cGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc                                                                                 <  1:3402953/100‑1 (MQ=255)

                    ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc                                                                                >  2:4372290/1‑100 (MQ=255)

                    ggTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc                                                                                <  1:2130785/100‑1 (MQ=255)

                     gTTAACTGAAGCTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt                                                                               <  1:39703/100‑1 (MQ=255)

                        aaCTGAAACTGTCCAGGTTTTGGGGTTCAGTTCATACACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtata                                                                            <  1:514489/100‑1 (MQ=255)

                        aaCTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtata                                                                            >  2:829328/1‑100 (MQ=255)

                          cTGAAACTGTCCAGGTTTTGGGGGTCGGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg                                                                          <  1:4400653/100‑1 (MQ=255)

                          cTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa                                                                           <  2:4220938/99‑1 (MQ=255)

                          cTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg                                                                          >  1:4228060/1‑100 (MQ=255)

                            gAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt                                                                        >  2:3037385/1‑100 (MQ=255)

                              tggcggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTa                                                                      >  1:871183‑M1/69‑100 (MQ=255)

                               gcTGTCCAGGTTTTGGGGGTCAGTTTATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTGAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAc                                                                     <  1:358891/99‑1 (MQ=255)

                                 tGTCCAGGTTTTGGGGGTAAGTTCATAAACGCCTTATCTGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGc                                                                         <  1:54214/94‑1 (MQ=255)

                                   tCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCAt                                                                 >  1:4107323/1‑100 (MQ=255)

                                    ccAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCACTAAATTGCATCGATGCGTAGTCCCTATAAGCTTACGCATc                                                                <  1:485171/100‑1 (MQ=255)

                                    ccAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATc                                                                >  1:3939988/1‑100 (MQ=255)

                                    ccAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATc                                                                >  2:696817/1‑100 (MQ=255)

                                    ccAGGTTTTGGGGGTCAGTATATAAACGTCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTATTCCCTATAAGCTTACGAAt                                                                 >  1:1818708/1‑99 (MQ=255)

                                     gcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGC‑CCGATGCGTAGTCCCTATAAGCTTACGCATCgg                                                              >  1:70695‑M1/62‑100 (MQ=255)

                                     cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCg                                                               >  2:1392116/1‑100 (MQ=255)

                                     cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCg                                                               <  1:3332338/100‑1 (MQ=255)

                                      catttttcaccattgggctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGC‑CCGATGCGTAGTCCCTATAAGCTTACGCATCggg                                                             >  2:4343877‑M1/61‑100 (MQ=255)

                                      catttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGC‑CCGATGCGTAGTCCCTATAAGCTTACGCATCggg                                                             >  2:1588941‑M1/61‑100 (MQ=255)

                                       ggTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCggg                                                             <  2:3042658/100‑1 (MQ=255)

                                        tttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc                                                            >  1:2872939‑M1/59‑100 (MQ=255)

                                        tttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc                                                            >  2:857918‑M1/59‑100 (MQ=255)

                                        tttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc                                                            >  2:3304949‑M1/59‑100 (MQ=255)

                                         ttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc                                                            >  2:3284371‑M1/58‑99 (MQ=255)

                                         ttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa                                                           >  2:1069585‑M1/58‑100 (MQ=255)

                                          tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCaa                                                          >  1:3729676/1‑100 (MQ=255)

                                           ttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt                                                         <  2:740212/100‑1 (MQ=255)

                                           ttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt                                                         <  2:3747767/100‑1 (MQ=255)

                                            tGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAtt                                                        >  2:3869328/1‑100 (MQ=255)

                                             gggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTg                                                       <  1:1687574/100‑1 (MQ=255)

                                              ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAGCGATGCGTAGTCCCTATAAGATTACGCATCGGGCAAtgg                                                       >  1:3128974/1‑97 (MQ=255)

                                                    gcgctgctgggattcaggaagacgattgggacgatggcgtgaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt                                                    >  1:2432534‑M1/47‑96 (MQ=255)

                                                    aGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTAc                                                >  2:4186560/1‑100 (MQ=255)

                                                    aGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTAc                                                >  2:1670883/1‑100 (MQ=255)

                                                     gTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACg                                               >  2:3365720/1‑100 (MQ=255)

                                                     gTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACg                                               >  2:1563580/1‑100 (MQ=255)

                                                     gTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAACTTACGAAACAAGCAATTGTATTTAc                                                >  1:1331191/1‑99 (MQ=38)

                                                     cgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACg                                               >  2:4294670‑M1/46‑100 (MQ=255)

                                                      ttCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGc                                              <  1:1062447/100‑1 (MQ=255)

                                                        tgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc                                             >  1:782220‑M1/43‑99 (MQ=255)

                                                        cATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCa                                            >  2:2944835/1‑100 (MQ=255)

                                                         aTAAACGCCTTATCCGGCCTAAAAACAACTCAAATTCCATAAATTGCACCCATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCAt                                           <  1:3079977/100‑1 (MQ=255)

                                                             aCGCCTTATCCGGCCTAAAAACAACTAATATTCAATAAATTGCGCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg                                         <  1:1452084/98‑1 (MQ=255)

                                                             aCGCCTTATCCGGCCTAAAAACAACTAAAATGCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc                                       <  2:2825823/100‑1 (MQ=255)

                                                                ccTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCa                                    >  2:2669654/1‑100 (MQ=255)

                                                                   tATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATc                                 >  2:2669790/1‑100 (MQ=255)

                                                                      ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc                              >  2:900697/1‑100 (MQ=255)

                                                                      ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc                              >  2:3374546/1‑100 (MQ=255)

                                                                      ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc                              >  2:1162779/1‑100 (MQ=255)

                                                                       cGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt                             >  2:2588366/1‑100 (MQ=255)

                                                                        ggCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc                              >  1:1857381/1‑98 (MQ=255)

                                                                        ggCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt                            >  2:3844170/1‑100 (MQ=255)

                                                                          ccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTcc                          <  1:3782843/100‑1 (MQ=255)

                                                                           cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCt                         >  2:308074/1‑100 (MQ=255)

                                                                           cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCt                         >  2:2564618/1‑100 (MQ=255)

                                                                           cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCt                         <  2:1210695/100‑1 (MQ=255)

                                                                                aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc                    <  2:218910/100‑1 (MQ=255)

                                                                                  cagcgaaaaTTCAATCAAGTGCGCCGAGGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTcc                          <  1:2235452/87‑1 (MQ=255)

                                                                                   atcTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca                 <  1:4301458/98‑1 (MQ=255)

                                                                                    acTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag                >  1:3536953/1‑100 (MQ=255)

                                                                                     cTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc               <  1:3594285/100‑1 (MQ=255)

                                                                                      tAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagca              >  2:4087930/1‑100 (MQ=255)

                                                                                       aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGCATCGcagcag             >  1:3705859/1‑100 (MQ=255)

                                                                                          aTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc          >  2:2784688/1‑100 (MQ=255)

                                                                                              aaTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg      >  1:1193118/1‑100 (MQ=255)

                                                                                              aaTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg      >  2:2643104/1‑100 (MQ=255)

                                                                                              aaTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAACGCAATg      >  2:395209/1‑100 (MQ=255)

                                                                                               aTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg     <  1:3349946/100‑1 (MQ=255)

                                                                                               aTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg     <  1:3211720/100‑1 (MQ=255)

                                                                                                  AATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa  <  2:342164‑M1/100‑1 (MQ=255)

GGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA  >  NC_000913/3625531‑3625728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.