New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3635921133 (0.850)23 (0.170) 12/154 NT 16.0% intergenic (+28/+287) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 = 3635933 126 (0.930)intergenic (+40/+275) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase

GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3635811‑3635921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccagcgttACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGCATA  <  NC_000913/3635933‑3635835
                                                                                                                                                                                                                  
GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATA                                                                                                                <  2:1178610/100‑1
GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATA                                                                                                                <  1:582723/100‑1
   TTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAA                                                                                                             <  1:1044412/100‑1
   TTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAA                                                                                                             >  1:2194720/1‑100
    TCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAAC                                                                                                            >  1:1388474/1‑100
    TCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAAC                                                                                                            <  2:2551966/100‑1
     CTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACC                                                                                                           >  1:4136172/1‑100
     CTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGAGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACC                                                                                                           >  1:3092550/1‑100
      TGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCA                                                                                                          <  2:1854266/100‑1
      TGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCA                                                                                                          >  1:3222120/1‑100
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCGATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                         >  1:3409160/1‑100
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                         >  1:2254956/1‑100
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                         >  2:2029892/1‑100
        GTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGC                                                                                                        <  2:168598/100‑1
         TCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCG                                                                                                       <  2:3293284/100‑1
         TCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCG                                                                                                       <  2:3670804/100‑1
          CGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGT                                                                                                      >  1:3014382/1‑100
           GGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT                                                                                                     >  2:2705809/1‑100
                             TTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCT                                                                                   <  2:372125/100‑1
                              TTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAACCCAGCGTTACGCAAATGGTCAACGCTG                                                                                  <  2:4136203/100‑1
                               TACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGG                                                                                 <  2:3085269/100‑1
                               TACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGG                                                                                 <  1:4101931/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  2:2266964/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  1:4215438/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  1:3818458/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  1:514511/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  2:1391123/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  2:143857/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  2:1959804/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                <  1:2761723/100‑1
                                 CGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTT                                                                               <  2:3432213/100‑1
                                 CGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTT                                                                               <  2:497077/100‑1
                                  GTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTT                                                                              <  1:138338/100‑1
                                  GTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTT                                                                              <  2:1850933/100‑1
                                   TTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACTCTGGTTT                                                                              <  2:1440774/99‑1
                                   TTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTT                                                                             <  1:2033138/100‑1
                                      TTCTCAATCGTTTCAATATGAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATC                                                                          <  2:3634227/100‑1
                                       TCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCC                                                                         <  2:590214/100‑1
                                        CTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCG                                                                        <  1:176869/100‑1
                                         TCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGG                                                                       <  1:3355927/100‑1
                                                           GAAGCGCGTTCTGCTAAAAAATAATCACAACGCACCGCATAAACCCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTT                                                     <  2:1747572/100‑1
                                                                                                   AAAACCAGCGTTAAGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGAAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAA             <  1:458715/100‑1
                                                                                                    AAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAAC            <  2:3173621/100‑1
                                                                                                     AACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACG           <  1:2170545/100‑1
                                                                                                     AACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACG           <  2:254477/100‑1
                                                                                                      ACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGT          >  2:3497819/1‑100
                                                                                                      ACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGT          >  1:1710420/1‑100
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA         >  2:2356796/1‑100
                                                                                                        CAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAA        <  1:278846/100‑1
                                                                                                        CAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAA        >  1:3824787/1‑100
                                                                                                          GCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAG      >  2:2938589/1‑100
                                                                                                          GCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAG      <  2:69846/100‑1
                                                                                                          GCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAG      <  1:1731325/100‑1
                                                                                                          GCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAG      <  2:3750550/100‑1
                                                                                                           CGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC     <  2:3137906/100‑1
                                                                                                           CGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC     >  2:3893247/1‑100
                                                                                                           CGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC     <  2:3985488/100‑1
                                                                                                            GTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGCA    >  1:2382255/1‑100
                                                                                                            GTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC     <  2:750278/99‑1
                                                                                                             TTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGCAT   >  2:3154278/1‑100
                                                                                                              TACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGCATA  <  2:2287239/100‑1
                                                                                                              TACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGCATA  <  2:2733296/100‑1
                                                                                                              TACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATGTGTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAGCAACGTAAAGCATn  <  1:1582680/100‑2
                                                                                                                                                                                                                  
GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3635811‑3635921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccagcgttACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGCATA  <  NC_000913/3635933‑3635835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.