New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3635921133 (0.850)23 (0.170) 12/154 NT 16.0% intergenic (+28/+287) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 = 3635933 126 (0.930)intergenic (+40/+275) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase

Only 100 of 268 total aligned reads displayed.

GGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTT  >  NC_000913/3635822‑3636020
                                                                                                   |                                                                                                   
ggTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT                                                                                                     >  2:2705809‑M1/1‑100 (MQ=255)
 gTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTg                                                                                                    <  2:964335/100‑1 (MQ=255)
    tGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGAcc                                                                                                 <  1:2800667/100‑1 (MQ=255)
     gggAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCa                                                                                                >  2:4049493/1‑100 (MQ=255)
         gCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTg                                                                                            <  2:1541011/100‑1 (MQ=255)
          cGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGc                                                                                           >  1:368425/1‑100 (MQ=255)
             tATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTa                                                                                        <  2:2287239‑M2/100‑2 (MQ=255)
             tATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTa                                                                                        <  2:2733296‑M2/100‑2 (MQ=255)
               tGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaac                                                                                      >  1:2382255‑M2/1‑97 (MQ=255)
                 cTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgc                                                                                    <  2:69846‑M2/100‑6 (MQ=255)
                 cTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgc                                                                                    <  2:3750550‑M2/100‑6 (MQ=255)
                   ttACGTTGTTCTCAATCGTTTCAATATTAGAAGAGAATAAAGAAAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTg                                                                                  <  1:472434/100‑1 (MQ=255)
                    tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctgg                                                                                 >  2:2356796‑M2/1‑92 (MQ=255)
                    agtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTgg                                                                                 >  2:1153057‑M1/69‑100 (MQ=255)
                     gtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGt                                                                                >  2:2631105‑M1/68‑100 (MQ=255)
                     gtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGt                                                                                >  2:1956400‑M1/68‑100 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggt                                                                                <  1:3818458‑M1/100‑22 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggt                                                                                <  2:143857‑M1/100‑22 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctggt                                                                                >  2:3497819‑M2/1‑91 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctggt                                                                                >  1:1710420‑M2/1‑91 (MQ=255)
                      taactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGtt                                                                               >  2:1326606‑M1/67‑100 (MQ=255)
                      cGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggtt                                                                               <  2:3432213‑M1/100‑23 (MQ=255)
                      cGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggtt                                                                               <  2:497077‑M1/100‑23 (MQ=255)
                      cGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctggtt                                                                               <  1:2170545‑M2/100‑11 (MQ=255)
                      cGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctggtt                                                                               <  2:254477‑M2/100‑11 (MQ=255)
                       gttgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggttt                                                                              <  2:1850933‑M1/100‑24 (MQ=255)
                       gttgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggttt                                                                              <  1:138338‑M1/100‑24 (MQ=255)
                        ttgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaactctggttt                                                                              <  2:1440774‑M1/99‑24 (MQ=255)
                        actttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgccgaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGtttt                                                                             >  1:1447417‑M1/65‑100 (MQ=255)
                         tattCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGttttt                                                                            >  2:2974927/3‑100 (MQ=255)
                          tttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGttt                                                                              >  1:420928‑M1/63‑97 (MQ=255)
                           ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                          <  2:3317313/100‑1 (MQ=255)
                            tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         >  2:1689809/1‑100 (MQ=255)
                            tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         >  2:2488569/1‑100 (MQ=255)
                            tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         >  2:3129053/1‑100 (MQ=255)
                            tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         <  2:3383892/100‑1 (MQ=255)
                            nctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         >  2:2078244/2‑100 (MQ=255)
                             gctgttttttatacttaaccacgatgcattattgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                        >  1:2978499‑M1/60‑100 (MQ=255)
                             ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggttttatccg                                                                        <  1:176869‑M1/100‑30 (MQ=255)
                             ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                        >  1:194747/1‑100 (MQ=255)
                             ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                        >  1:1709932/1‑100 (MQ=255)
                             ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                        <  1:1012320/100‑1 (MQ=255)
                             ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                        >  1:609466/1‑100 (MQ=255)
                              tcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAg                                                                       <  2:4137156/100‑1 (MQ=255)
                              ctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAg                                                                       >  2:784326‑M1/59‑100 (MQ=255)
                               cAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAgg                                                                      >  1:2997512/1‑100 (MQ=255)
                                    gTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatca                                                                 <  2:2195120/100‑1 (MQ=255)
                                       tCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACAAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGa                                                              >  1:268769/1‑100 (MQ=255)
                                        cAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaa                                                             >  1:1030704/1‑100 (MQ=255)
                                          atatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAAt                                                           <  2:3052737/100‑1 (MQ=255)
                                          atatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAAt                                                           >  1:128388/1‑100 (MQ=255)
                                          atatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAAt                                                           >  1:3336669/1‑100 (MQ=255)
                                           tatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAGACCAGCGTTGAACATTTGCGTAACGCTGGTTTTTCTTAAGCATCATGAAATa                                                          >  1:3532569/1‑100 (MQ=255)
                                           tatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATa                                                          <  2:1022798/100‑1 (MQ=255)
                                            atTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATaa                                                         >  2:526459/1‑100 (MQ=255)
                                             ttAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAAc                                                        >  1:1348681/1‑100 (MQ=255)
                                                gAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                     >  2:2902981/1‑100 (MQ=255)
                                                gAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                     <  1:1927847/100‑1 (MQ=255)
                                                  aGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTGTTAGGCATCATGAAATAACgca                                                     >  1:2511073/1‑98 (MQ=255)
                                                   gCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgcagca                                                  <  2:1065088/100‑1 (MQ=255)
                                                   gCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgcag                                                    <  1:2555929/98‑1 (MQ=255)
                                                     gggTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCAtt                                                <  1:903428/100‑1 (MQ=255)
                                                            gCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCAt                                         >  1:1643818/1‑100 (MQ=255)
                                                             cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATa                                        >  1:237306/1‑100 (MQ=255)
                                                               aaaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGt                                      <  1:92488/100‑1 (MQ=255)
                                                                aaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctgggtttatgcggtgcgttgtgattattttttagcagaacgcgcttc                                     <  2:1747572‑M2/100‑53 (MQ=255)
                                                                 aaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTgg                                    >  2:648002/1‑100 (MQ=255)
                                                                   aataatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCagatcggaa                                  >  2:2174646/1‑92 (MQ=255)
                                                                       atTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTCAGCATCATGAAATAAAGCAGCATTAATGCATAGTAGTTa                                 >  1:3586292/1‑97 (MQ=255)
                                                                          gCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGtata                           >  2:1487870/1‑100 (MQ=255)
                                                                           cAACGTACCGGATAAAACCAGCGTTGACCATTTCCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACTCAGCATTAATGCATAGTGGTTAAGTATaa                          >  1:2658540/1‑100 (MQ=255)
                                                                               gTACCGGATAAAACCAGCGTTGACCATTTGCGTATCGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaaaaa                       <  2:1124772/99‑1 (MQ=255)
                                                                                tACCGGATAAAACCAGCGTTGACCATTTGGGTAACGGAGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGATAAAAAAAAAAAAAc                     <  1:2143793/100‑1 (MQ=255)
                                                                                tACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAAc                     <  1:3173603/100‑1 (MQ=255)
                                                                                 aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                    <  1:3750524/100‑1 (MQ=255)
                                                                                  ccGGATAAAACCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattga                   <  1:3355927‑M2/100‑71 (MQ=255)
                                                                                   cGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGc                  >  2:3527374/1‑100 (MQ=255)
                                                                                    ggATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCa                 <  2:3173475/100‑1 (MQ=255)
                                                                                     gATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGTCATAATGAAATAACTCAACATTCGTGCATAGTGTTTCAGTATACAAAACAGcca                >  1:3886228/1‑98 (MQ=255)
                                                                                        aaaaCCAGCGTTaagcaaatggtcaacgctggttttatccggtacgttgaaattattttttagcagaacccgcttctaatattgaaacgattgagaacaa             <  1:458715‑M1/100‑89 (MQ=255)
                                                                                        aaaaCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaa             <  1:2033138‑M2/100‑77 (MQ=255)
                                                                                        aaaaCCAGCGTTACGCAAATGCTAAAAGCTGGTTTTTCTTCGGAATCATGAAATAACGCAGAATAGATGCATAATGGCTCAGTATAAAAAACAGc                  >  1:4054765/1‑95 (MQ=12)
                                                                                           aCCAGCTTTGAGCTTTTGTATAACGGTGGTTTTTTTTATGTATCATGAAATAACGCAGCCTTATTTCATATTGGTTAATTTTAAAAAATAGCAAAGTTa           <  1:3462589/99‑1 (MQ=255)
                                                                                           aCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgt          <  1:2761723‑M2/100‑80 (MQ=255)
                                                                                           aCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgt          <  2:2266964‑M2/100‑80 (MQ=255)
                                                                                           ACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc          <  1:3508239‑M1/100‑1 (MQ=255)
                                                                                            ccAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgta         <  2:3085269‑M2/100‑81 (MQ=255)
                                                                                            ccAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgta         <  1:4101931‑M2/100‑81 (MQ=255)
                                                                                             cAGCGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaa        >  1:3824787‑M1/1‑7 (MQ=255)
                                                                                             CAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTg        >  2:3653785‑M1/1‑100 (MQ=255)
                                                                                              aGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaa       <  2:372125‑M2/100‑83 (MQ=255)
                                                                                               GCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGAAAAGTTACTGtt      <  1:3829921‑M1/100‑1 (MQ=255)
                                                                                                cGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaagc     >  2:3893247‑M1/1‑4 (MQ=255)
                                                                                                cGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaagc     <  2:3985488‑M1/100‑97 (MQ=255)
                                                                                                 gTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaagc     <  2:750278‑M1/99‑97 (MQ=255)
                                                                                                 GTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttt    <  2:2777356‑M1/100‑1 (MQ=255)
                                                                                                 GTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttt    <  1:122498‑M1/100‑1 (MQ=255)
                                                                                                  ttacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaagcat   >  2:3154278‑M1/1‑2 (MQ=255)
                                                                                                  ttGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGTAACTTTGCTGttttt   <  2:3222138/100‑1 (MQ=255)
                                                                                                   tacgcaaatggtcaacgctggttttatccggtacgttgcaattatgtgttagcagaacccgcttctaatattgaaacgattgagagcaacgtaaagcatn  <  1:1582680‑M1/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
GGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTT  >  NC_000913/3635822‑3636020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.