New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3898636	NA (NA)	12 (0.080)	8/162	NT	NA	noncoding (6/26 nt)	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 3898650	NA (NA)					noncoding (20/26 nt)	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3898530‑3898636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATAA  <  NC_000913/3898650‑3898552                                                                                                                                                                                                                AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACA                                                                                                            <  2:647569/100‑1  AAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAG                                                                                                           <  2:567446/100‑1     gtGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTGTCGTAGTTATTTAAATAATGAGAACAGGCC                                                                                                        <  1:1687168/98‑1     GGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCC                                                                                                        <  1:4242672/100‑1      GGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCG                                                                                                       <  1:1264510/100‑1         GGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTGGTAGTTATTTAAATAATGAGAACAGGCC                                                                                                        >  1:1932851/1‑96          GTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAac                                                                                                   >  1:3871708/1‑98                         ATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCC                                                                                    <  2:3341618/100‑1                             CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                <  1:508531/100‑1                             CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                <  2:421752/100‑1                              TTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCT                                                                               <  2:3924993/100‑1                              TTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGACAAGAGGCCGGATGTGTGAATTACGCTCCGGCCT                                                                               <  1:2893684/100‑1                               TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG                                                                              <  2:2954969/100‑1                                tCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                             <  1:3427224/99‑1                                CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                             <  2:2173340/100‑1                                CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                             <  2:436095/100‑1                                 CGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTa                                                                            >  2:3427246/1‑99                                   CTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCT                                                                          <  1:1143296/100‑1                                                           ACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAA                                                  <  1:1296664/100‑1                                                                                                    AGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAA         >  1:3571477/1‑100                                                                                                    AGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTAAGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAA         <  1:2099918/100‑1                                                                                                     GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG        >  1:926741/1‑100                                                                                                      GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       >  2:1117553/1‑100                                                                                                      GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       >  2:3161582/1‑100                                                                                                      GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       <  2:32722/100‑1                                                                                                      GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       <  2:3589186/100‑1                                                                                                      GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       <  2:4176538/100‑1                                                                                                      GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       >  1:1950712/1‑100                                                                                                       CCGGATGTTTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG      <  1:1296894/100‑1                                                                                                       CCGGATGTGTGAATTACGCTTCGGCCTGTTCTCATTATCTGAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG      <  1:1297475/100‑1                                                                                                       CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG      <  1:2298869/100‑1                                                                                                       CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       <  1:1596420/99‑1                                                                                                        CGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGA     <  1:581288/100‑1                                                                                                         GGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT    >  1:2914173/1‑100                                                                                                         GGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT    <  1:2084224/100‑1                                                                                                          GATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT    <  1:1375819/99‑1                                                                                                          GATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGA     <  2:2113460/98‑1                                                                                                           ATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATAA  <  2:3899641/100‑1                                                                                                                                                                                                                AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3898530‑3898636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATAA  <  NC_000913/3898650‑3898552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.