New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3898636NA (NA)12 (0.080) 8/162 NT NA noncoding (6/26 nt) REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3898650 NA (NA)noncoding (20/26 nt) REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 250 total aligned reads displayed.

GGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCT  >  NC_000913/3898538‑3898735
                                                                                                  |                                                                                                   
ggtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAg                                                                                                    >  2:3034019/1‑100 (MQ=255)
ggtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAg                                                                                                    >  2:2361820/1‑100 (MQ=255)
ggtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAg                                                                                                    >  1:3264392/1‑100 (MQ=255)
ggtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAg                                                                                                    <  1:4208632/100‑1 (MQ=255)
 gtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAac                                                                                                   >  1:3871708‑M1/1‑98 (MQ=255)
 gtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGc                                                                                                   <  1:3790969/100‑1 (MQ=255)
     ttGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTaa                                                                                               >  1:3074595/1‑100 (MQ=255)
      tGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAAt                                                                                              <  1:3959014/100‑1 (MQ=255)
       gTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAAt                                                                                              >  1:2551361/1‑99 (MQ=255)
        tCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTc                                                                                            <  2:669322/100‑1 (MQ=255)
          aGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTcac                                                                                          <  2:1979920/100‑1 (MQ=255)
           gggTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTcaca                                                                                         <  2:277558/100‑1 (MQ=255)
           gggTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTAAGACTGTGGGGTGATTTTTCGTAGTTTTTTAAATAATGAGAACAGGCCGGAGCGTAATTcaca                                                                                         <  1:611102/100‑1 (MQ=255)
           gggTTATCTCTTCCGCTGTCTACACAGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTcaca                                                                                         <  2:3475979/100‑1 (MQ=255)
             gTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGCGCGTAATTcacac                                                                                        >  2:4126212/1‑99 (MQ=255)
             gTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTcacaca                                                                                       >  2:752526/1‑100 (MQ=255)
             gTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTcacaca                                                                                       >  2:1623366/1‑100 (MQ=255)
                aTCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtc                                                                                     <  1:1375819‑M2/99‑3 (MQ=255)
                 tctcTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtccg                                                                                   <  1:581288‑M2/100‑5 (MQ=255)
                 tctcTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtc                                                                                     <  2:2113460‑M2/98‑3 (MQ=255)
                  ctctTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCAAACAtccgg                                                                                  <  1:1296894‑M2/100‑6 (MQ=255)
                   tctTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTcacaagatcgga                                                                                 >  2:2069832/1‑92 (MQ=255)
                   tctTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtccggc                                                                                 >  2:1117553‑M2/1‑94 (MQ=255)
                   catccttcgctgatggtaatcgctgataaagccgctgccgcagaattagcactcggttaagcttaagaaataAGGCCGGAGCGTAATTCACACATCCGGc                                                                                 >  1:552820‑M1/73‑100 (MQ=255)
                    ctTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAtgtgtgaattacgctccggcc                                                                                <  1:508531‑M1/100‑22 (MQ=255)
                    ctTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAtgtgtgaattacgctccggcc                                                                                <  2:421752‑M1/100‑22 (MQ=255)
                    ctTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtccggcc                                                                                >  1:926741‑M2/1‑93 (MQ=255)
                     ttCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCTTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtccggcct                                                                               <  1:2099918‑M2/100‑9 (MQ=255)
                      tCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAtgtgtgaattacgctccggcctg                                                                              <  2:2954969‑M1/100‑24 (MQ=255)
                      tCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCtt                                                                              >  2:3139194/1‑100 (MQ=255)
                      ccttcgctgatggtaatcgctgataaagccgctgccgcagaattagcactcggttaagcttaagaaataAGGCCGGAGCGTAATTCACACATCCGGCCtt                                                                              >  1:3158135‑M1/70‑100 (MQ=255)
                      accGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCtt                                                                              >  1:3540344/2‑100 (MQ=255)
                       tcgCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAtgtgtgaattacgctccggcctgt                                                                             <  1:3427224‑M1/99‑25 (MQ=255)
                       ccGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAtgtgtgaattacgctccggcctgt                                                                             <  2:2173340‑M1/100‑25 (MQ=255)
                       ccGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTCTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTa                                                                             <  1:3095474/100‑1 (MQ=255)
                            gTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTc                                                                         <  2:1686630/99‑1 (MQ=255)
                             tgatggtaatcgctgataaagccgttgccgcagaattagcactcggttaagcttaagaaataAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCt                                                                        >  1:3171676‑M1/63‑99 (MQ=255)
                              ctcCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTa                                                                      >  2:1035142/1‑100 (MQ=255)
                              ctcCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCAGGAGCGTAATTCACACATCCGGCCTTATTTCTTa                                                                      >  2:428971/1‑100 (MQ=255)
                                tggtaatcgctgataaagccgctgccgcagaattagcactcggttaagcttaagaaataAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAg                                                                    >  2:2227520‑M1/60‑100 (MQ=255)
                                tggtaatcgctgataaagccgctgccgcagaattagcactcggttaagcttaagaaataAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAg                                                                    >  2:2690582‑M1/60‑100 (MQ=255)
                                 cACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGc                                                                   >  2:1297083/1‑100 (MQ=255)
                                   cTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCtt                                                                 <  2:3497085/100‑1 (MQ=255)
                                      cGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAAc                                                              <  1:1615056/100‑1 (MQ=255)
                                       ggaatgCTGAGACTGTGGGGTGATTGTTCGTAGTTATTTAAATAATGAGAACAGGCGGGAGCGTAATTCCCATATCGGGCCTTAGGTATTAAGCTGAAcg                                                             <  1:2475607/95‑2 (MQ=255)
                                          aaGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAg                                                          <  1:3653539/100‑1 (MQ=255)
                                             cTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGc                                                       <  2:1892962/100‑1 (MQ=255)
                                                   cTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTc                                                 <  2:2693968/100‑1 (MQ=255)
                                                   cTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTc                                                 <  1:2009408/100‑1 (MQ=255)
                                                      tgaggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGc                                              <  1:1201012/97‑1 (MQ=255)
                                                      tgGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCAGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTTTGc                                              >  1:2839839/1‑100 (MQ=255)
                                                       ggggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCg                                             <  1:1780901/100‑1 (MQ=255)
                                                       ggggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCg                                             <  1:1150913/100‑1 (MQ=255)
                                                       ggggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTATTAAGCTTAACCGAGTGCTAATTCTGc                                              >  1:3435465/1‑99 (MQ=255)
                                                        gggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCgg                                            <  1:398583/100‑1 (MQ=255)
                                                        gggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCgg                                            >  2:3917028/1‑100 (MQ=255)
                                                         ggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGc                                           <  2:20091/100‑1 (MQ=255)
                                                         ggTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCCGCGGc                                           >  2:1480656/1‑100 (MQ=255)
                                                            gATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGc                                        >  2:2043360/1‑100 (MQ=255)
                                                            gATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGc                                        <  1:1137740/100‑1 (MQ=255)
                                                              tttttCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAtccggcctgttctcattatttaaataactacgaaaaatcaccccacagt                                      <  1:1296664‑M2/100‑50 (MQ=255)
                                                               tgttCTTAGGTATTTAAATAATGAGCACAGCCCGGTGCGTACTTCACTCACCCGGCCGTTGTTCTTATTCTGAACCGAGTGCTAATTCTGCGGCATCgtc                                     <  1:358242/98‑3 (MQ=255)
                                                                tttCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCt                                    <  1:2924034/100‑1 (MQ=255)
                                                                 ttCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCtt                                   <  2:1422469/100‑1 (MQ=255)
                                                                        ttATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGc                            <  2:3995973/100‑1 (MQ=255)
                                                                           tttAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGAt                         >  2:2296264/1‑100 (MQ=255)
                                                                            ttAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGAtt                        <  2:890069/100‑1 (MQ=255)
                                                                             tAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTa                       <  2:330125/100‑1 (MQ=255)
                                                                              aaaTAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTAc                      >  1:3010604/1‑100 (MQ=255)
                                                                              aaaTAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTAc                      <  2:138795/100‑1 (MQ=255)
                                                                                ataatGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTAcc                     <  1:2155081/99‑1 (MQ=255)
                                                                                ataatGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCa                    >  1:866477/1‑100 (MQ=255)
                                                                                 taatGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCAt                   <  2:454968/100‑1 (MQ=255)
                                                                                  aatGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATc                  >  1:1010930/1‑100 (MQ=255)
                                                                                   atGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCa                 >  1:2762388/1‑100 (MQ=255)
                                                                                    tGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAg                <  2:3005231/100‑1 (MQ=255)
                                                                                      agaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCg              <  2:3566632/100‑1 (MQ=255)
                                                                                      agaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTGATTAAGCTTAATAGCGGGCTTATTCTGCGGCTGTCTCTTTATCAGCGATTACCGTcgg                >  1:1541119/1‑96 (MQ=255)
                                                                                       gaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGa             >  1:233682/1‑100 (MQ=255)
                                                                                       gaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGa             >  1:4305480/1‑100 (MQ=255)
                                                                                        tacAGGCCGGAGCGTAATTCACACAtccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcg            >  2:3427246‑M2/2‑25 (MQ=255)
                                                                                         aCAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAg           <  2:3592104/100‑1 (MQ=255)
                                                                                           agcccGGAGCGTAATTCACACATCCGGCCTAATTTCTTAAGCTTAACTGAGTGCTCATTCCGCGGCAGCGGCTCTATCAGAGATTACCATCACCGAAGGa         >  1:1339878/4‑100 (MQ=255)
                                                                                           aGGCCGGAGCGTAATTCACACAtccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaa         <  2:3924993‑M2/100‑79 (MQ=255)
                                                                                           aGGCCGGAGCGTAATTCACACAtccggcctcttgtcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaa         <  1:2893684‑M2/100‑79 (MQ=255)
                                                                                           AGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGa         >  2:3485305‑M1/1‑100 (MQ=255)
                                                                                            GGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAt        >  2:1927068‑M1/1‑100 (MQ=255)
                                                                                             gCCGGAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaaga       <  2:3589186‑M1/100‑95 (MQ=255)
                                                                                             gCCGGAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaaga       >  1:1950712‑M1/1‑6 (MQ=255)
                                                                                             gCCGGAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaaga       <  2:32722‑M1/100‑95 (MQ=255)
                                                                                             gCCGGAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaaga       >  2:3161582‑M1/1‑6 (MQ=255)
                                                                                             GCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATg       >  2:2212215‑M1/1‑100 (MQ=255)
                                                                                              ccGGAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaagag      <  1:2298869‑M1/100‑96 (MQ=255)
                                                                                              ccGGAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaaga       <  1:1596420‑M1/99‑95 (MQ=255)
                                                                                              CCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGc      >  1:1953911‑M1/1‑100 (MQ=255)
                                                                                               CGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCa     >  2:3714693‑M1/1‑100 (MQ=255)
                                                                                                ggAtgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaagagat    <  1:2084224‑M1/100‑98 (MQ=255)
                                                                                                ggAGCGTAATTCACACAtccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaagagat    <  2:3341618‑M2/100‑84 (MQ=255)
                                                                                                 GAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGc   >  1:2705541‑M1/1‑100 (MQ=255)
                                                                                                  atgtgtgaattacgctccggcctgttctcattatttaaataactacgaaaaatcaccccacagtctcagcttgccgcagtggagacagcggaagagataa  <  2:3899641‑M1/100‑100 (MQ=255)
                                                                                                  |                                                                                                   
GGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCT  >  NC_000913/3898538‑3898735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.