| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 39200 | NA (NA) | 12 (0.080) | 4/164 | NT | NA | noncoding (50/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 39232 | NA (NA) | noncoding (82/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/39102‑39200‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTC < NC_000913/39232‑39127 GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 1:1113256/1‑100GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 1:1321568/1‑100GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 2:1777366/1‑100GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 2:3573046/1‑100GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 1:3538051/1‑100GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 1:3537777/1‑100GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGG > 2:4054106/1‑100 GTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTTCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGC < 2:1976842/100‑1 GTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACACTTTATCCGGCCTACATTCGTGCTCCCGTAGGC < 1:1785954/100‑1 TAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCC < 2:2206934/100‑1 TAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCC < 2:108609/100‑1 TAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCC < 1:3225022/100‑1 AGATGATCCCTGAGTTGCTCTTGAAAAATTTATGTCGCGCATTACTGCCGGATGCCGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCT < 1:1393546/100‑1 AGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCT > 2:4118069/1‑100 AGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCT > 1:370490/1‑100 GATGATCCATTATTTGCTCCTGAAAACTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTG < 2:200013/100‑1 ATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGA < 2:3773242/100‑1 ATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGA < 1:760145/100‑1 ATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGA > 2:1529197/1‑100 TGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGAT > 1:3687032/1‑100 TGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGAT > 1:1924886/1‑100 TGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGAT > 2:1827821/1‑100 TGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGAT < 2:1880329/100‑1 ATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACTCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGG < 1:2672070/100‑1 ATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGG < 1:3787341/100‑1 ATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGG < 2:279686/100‑1 ATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGG < 2:2287856/100‑1 ATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGG < 1:1337130/100‑1 TTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGC < 1:1045000/100‑1 TTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGC < 2:224153/100‑1 TTATGTAGCGCATGACTGCCGGATGCGGCGTAAAGGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGC < 1:2639731/99‑1 TTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGC < 2:779599/99‑1 ATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTA < 1:1942410/100‑1 AGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGG < 2:2670649/100‑1 AGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGG < 2:3007698/100‑1 gaCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAA > 2:2991456/3‑100 GCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAA < 2:1837321/100‑1 GCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAA > 1:281127/1‑100 CCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACACAAAT > 1:3038451/1‑100 CTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATT > 2:1927938/1‑100 CTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATT > 1:1604128/1‑100 TGATGCGACGCTGATGCGTCTTATCGGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTT > 1:926601/1‑100 TGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTT > 2:737036/1‑100 GATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTT > 1:4118039/1‑100 TGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTC > 2:1778519/1‑100 TGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTC < 2:1133251/100‑1 GGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/39102‑39200‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTC < NC_000913/39232‑39127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |