New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4621981175 (1.110)11 (0.080) 7/166 NT 6.2% coding (213/1332 nt) yjjJ putative protein kinase
?NC_000913 = 4622003 168 (1.150)coding (235/1332 nt) yjjJ putative protein kinase
Rejected: Frequency below cutoff threshold.

Only 100 of 225 total aligned reads displayed.

GGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCC  >  NC_000913/4621882‑4622080
                                                                                                   |                                                                                                   
ggTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGA                                                                                                     >  1:4166767‑M1/1‑100 (MQ=255)
    aTTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAGTTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAgg                                                                                                 >  1:3091571/1‑100 (MQ=255)
    aTTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAgg                                                                                                 <  2:216521/100‑1 (MQ=255)
    aTTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAgg                                                                                                 >  1:3926315/1‑100 (MQ=255)
       cGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGgcgc                                                                                              >  2:3917510/1‑100 (MQ=255)
       cGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGgcgc                                                                                              <  2:1235269/100‑1 (MQ=255)
        gCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCa                                                                                             <  2:2047273/100‑1 (MQ=255)
        gCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCa                                                                                             >  2:1557955/1‑100 (MQ=255)
         cTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCAt                                                                                            <  2:3672325/100‑1 (MQ=255)
           ttGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATaa                                                                                          >  2:545927/1‑100 (MQ=255)
           ttGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATaa                                                                                          <  1:2929580/100‑1 (MQ=255)
             ggTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAAt                                                                                        <  1:1133457/100‑1 (MQ=255)
             ggTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAAt                                                                                        <  2:2458247/100‑1 (MQ=255)
             ggTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAAt                                                                                        >  1:1913251/1‑100 (MQ=255)
               tAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTc                                                                                      <  2:3356899/100‑1 (MQ=255)
               tAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTc                                                                                      >  2:1059904/1‑100 (MQ=255)
               tAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTc                                                                                      >  2:3515303/1‑100 (MQ=255)
                aaaGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATTGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCCTAAATTc                                                                                      >  1:3809879/1‑99 (MQ=255)
                aaaGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCg                                                                                     >  2:3066679/1‑100 (MQ=255)
                aaaGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCg                                                                                     >  2:2237610/1‑100 (MQ=255)
                aaaGCAAGGGCAACGCGATATGCACTGCTGCGTCCATATCGCGGAATTGAGCGTATTCCAGTCTGGCTGGTGGACGATACCGGAAAGGCGCATAAATTCg                                                                                     <  1:3756472/100‑1 (MQ=255)
                 aaGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGc                                                                                    <  1:257406/100‑1 (MQ=255)
                  aGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGcc                                                                                   >  2:2177161/1‑100 (MQ=255)
                  aGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGcc                                                                                   >  2:3940931/1‑100 (MQ=255)
                  aGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATACCCGTCTGGCGGGTGGGCGATACCGGAAAGGCGCATAAATTCGcc                                                                                   >  1:3944901/1‑100 (MQ=255)
                   gCACGGGCAACGCGCTACGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCg                                                                                  <  1:3673395/100‑1 (MQ=255)
                   gCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCg                                                                                  <  2:3559405/100‑1 (MQ=255)
                    cACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGa                                                                                 <  2:294280/100‑1 (MQ=255)
                    cACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGa                                                                                 >  1:1233393/1‑100 (MQ=255)
                     aCGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGAc                                                                                <  2:3271262/100‑1 (MQ=255)
                     aCGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGAc                                                                                <  2:850511/100‑1 (MQ=255)
                        ggCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACAtc                                                                             <  2:4302251‑M2/100‑3 (MQ=255)
                            aCGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACAtccggt                                                                         >  1:831142‑M2/1‑94 (MQ=255)
                             cgcgATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggta                                                                        <  2:2304278‑M1/100‑30 (MQ=255)
                              gcgATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtat                                                                       <  1:1688697‑M1/100‑31 (MQ=255)
                              gcgATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACAtccggt                                                                         >  2:1724358‑M2/1‑92 (MQ=255)
                              gcgATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGCTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTtg                                                                       <  1:407896/100‑1 (MQ=255)
                                gATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcg                                                                     <  1:1534826‑M1/100‑33 (MQ=255)
                                gATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcg                                                                     <  2:4356295‑M1/100‑33 (MQ=255)
                                gATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcg                                                                     <  1:1359107‑M1/100‑33 (MQ=255)
                                 atatGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcgt                                                                    <  2:4273641‑M1/100‑34 (MQ=255)
                                  tatGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcgtc                                                                   <  1:42158‑M1/100‑35 (MQ=255)
                                  tatGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTtgtaga                                                                   >  1:938218/1‑97 (MQ=255)
                                   atGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcgtcc                                                                  <  1:4099772‑M1/100‑36 (MQ=255)
                                   atGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTg                                                                  >  2:1072823/1‑100 (MQ=255)
                                    tgtaCTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTgg                                                                 >  2:717386/4‑100 (MQ=255)
                                    tGCACTGGTGCGTCCTTATCGCGGAATTGATCGTATTCACGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcg                                                                     <  1:3720411‑M1/96‑33 (MQ=255)
                                     gCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAtgtcggcgaatttatgcgcctttccggtatcgtcc                                                                  <  2:3520013‑M1/98‑36 (MQ=255)
                                     gCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGc                                                                >  1:1036502/1‑100 (MQ=255)
                                     gCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGc                                                                <  1:1446520/100‑1 (MQ=255)
                                        ctgctgCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGc                                                             >  1:1744841/1‑100 (MQ=255)
                                        ctgctgCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGc                                                             >  2:210133/1‑100 (MQ=255)
                                             gcGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGa                                                        >  1:2798339/1‑100 (MQ=255)
                                             gcGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGa                                                        <  1:2335109/100‑1 (MQ=255)
                                               gTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAg                                                      <  1:1470931/100‑1 (MQ=255)
                                               gTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAg                                                      <  2:1442524/100‑1 (MQ=255)
                                               gTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAg                                                      <  2:1913258/100‑1 (MQ=255)
                                                  cTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTg                                                   >  2:3747911/1‑100 (MQ=255)
                                                  cTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTg                                                   <  2:4294485/100‑1 (MQ=255)
                                                  cTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTg                                                   <  1:3484743/100‑1 (MQ=255)
                                                   ttATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGt                                                  >  1:3032296/1‑100 (MQ=255)
                                                     aTCGCGGAATTGAGCGTATTCCCGTTTGGCGGGGGGGCGATACGGGAAAGGCGCATAACTTCGCCGACATTCGGTTGTGCTGGCCGCGGGGACGTTGt                                                  >  1:3743810/1‑98 (MQ=255)
                                                     aTCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCt                                                >  2:1608744/1‑100 (MQ=255)
                                                      ttccgatcttGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTg                                               <  1:856943/92‑1 (MQ=255)
                                                        gcgGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGt                                             >  1:3961568/1‑100 (MQ=255)
                                                          ggAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTaa                                           >  2:1774851/1‑100 (MQ=255)
                                                           gAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAAc                                          >  2:2846432/1‑100 (MQ=255)
                                                               tGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTgagatcggaa                                      >  2:856946/1‑91 (MQ=255)
                                                               tGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGgc                                      >  1:750940/1‑100 (MQ=255)
                                                                gAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCAGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGgcg                                     <  1:2717617/100‑1 (MQ=255)
                                                                 aGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCCGGTAACAGgcgc                                    >  1:1984319/1‑100 (MQ=255)
                                                                  gCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATACATTCGCCGACATCCGGCCGTGCTGGCCGCAGGGAAGTTGTCTGGCAACAGgcgc                                    >  1:542839/1‑99 (MQ=255)
                                                                  gCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCa                                   <  1:1774844/100‑1 (MQ=255)
                                                                  gCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCa                                   >  1:2592163/1‑100 (MQ=255)
                                                                    gTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGa                                 >  2:2305143/1‑100 (MQ=255)
                                                                    gTATTCCCGACTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGa                                 >  2:3607789/1‑100 (MQ=255)
                                                                     tATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGAt                                >  1:3608353/1‑100 (MQ=255)
                                                                      aTTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATg                               >  2:439183/1‑100 (MQ=255)
                                                                        tCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGc                             <  1:142365/100‑1 (MQ=255)
                                                                        tCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGc                             <  2:1894698/100‑1 (MQ=255)
                                                                         cccGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGcg                            <  1:2094032/100‑1 (MQ=255)
                                                                         cccGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGcg                            <  1:804707/100‑1 (MQ=255)
                                                                               tGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAAc                      >  1:4009084/1‑100 (MQ=255)
                                                                                  cGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGt                   <  1:3515279/100‑1 (MQ=255)
                                                                                   gggTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTg                  >  2:249097/1‑100 (MQ=255)
                                                                                        gACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTg             >  2:533715/1‑100 (MQ=255)
                                                                                          cGATACCGGAAAGGCGCATAAATTCGCCGACAGCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGAt           <  1:2147717/100‑1 (MQ=255)
                                                                                           gATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATg          <  2:1681430/100‑1 (MQ=255)
                                                                                           gATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATg          <  2:3812152/100‑1 (MQ=255)
                                                                                             tACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGt        <  2:2685919/100‑1 (MQ=255)
                                                                                             gacgggAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATg          <  2:312056/94‑1 (MQ=255)
                                                                                              aCCGGAtgtcggcgaatttatgcgcctttccggtatcgtccacccgccagacgggaatacgctcaattccgcgataaggacgcagcagtgcatatcgcgt       >  1:936885‑M1/1‑6 (MQ=255)
                                                                                              aCCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGtt       <  2:3249431/100‑1 (MQ=255)
                                                                                               ccGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGttt      >  2:781850/1‑100 (MQ=255)
                                                                                                cGGAtgtcggcgaatttatgcgcctttccggtatcgtccacccgccagacgggaatacgctcaattccgcgataaggacgcagcagtgcatatcgcgttg     <  2:1801541‑M1/100‑97 (MQ=255)
                                                                                                cGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTg     <  2:3314246/100‑1 (MQ=255)
                                                                                                 ggAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGc    <  2:271820/100‑1 (MQ=255)
                                                                                                   atgtcggcgaatttatgcgcctttccggtatcgtccacccgccagacgggaatacgctcaattccgcgataaggacgcagcagtgcatatcgcgttgccc  <  1:2551597‑M1/100‑100 (MQ=255)
                                                                                                   aaaGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGccc  <  2:578186/100‑1 (MQ=255)
                                                                                                   aaaGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCCGGTAACAGGCGCGGATGGCGACGAACAGGGGTTTGATGGTTGGcgc  >  1:4316321/1‑98 (MQ=255)
                                                                                                   |                                                                                                   
GGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGAAAGGCGCATAAATTCGCCGACATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCC  >  NC_000913/4621882‑4622080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.