New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1040547 =NA (NA)15 (0.110) 8/158 NT NA noncoding (5/36 nt) REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1040579 = NA (NA)intergenic (+42/‑38) cbdX/appA putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

Only 100 of 206 total aligned reads displayed.

TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT  >  NC_000913/1040448‑1040646
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atgcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattg                                                                                                     >  1:3898795‑M1/100‑100 (MQ=255)
 tgcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc                                                                                                    <  2:4299226‑M1/2‑1 (MQ=255)
 ggTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGc                                                                                                    >  1:3295631/1‑100 (MQ=255)
  gcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc                                                                                                    >  1:1656394‑M1/98‑99 (MQ=255)
  gcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatcggacattattgattGcc                                                                                                   >  2:515071‑M1/98‑100 (MQ=255)
  gTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCAGCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGcc                                                                                                   <  1:2106814/100‑1 (MQ=255)
  gTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGcc                                                                                                   <  2:254252/100‑1 (MQ=255)
    aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTg                                                                                                 >  1:1187015/1‑100 (MQ=255)
    aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTg                                                                                                 >  1:690969/1‑100 (MQ=255)
      ttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGAt                                                                                               <  2:63954/100‑1 (MQ=255)
       ttgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATg                                                                                              >  1:2659666‑M1/93‑100 (MQ=255)
       ttgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATg                                                                                              >  1:1293869‑M1/93‑100 (MQ=255)
       tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATg                                                                                              >  1:1503018/1‑100 (MQ=255)
        tgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgc                                                                                             >  2:2337905‑M1/92‑100 (MQ=255)
        tgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgc                                                                                             >  1:113314‑M1/92‑100 (MQ=255)
        aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgc                                                                                             <  1:1124739/100‑1 (MQ=255)
         cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcg                                                                                            >  2:3638816/1‑100 (MQ=255)
             ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTTGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgc                                                                                             >  1:4325787/1‑95 (MQ=255)
             ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGGCTGATGCGgcgc                                                                                        <  2:2891967/100‑1 (MQ=255)
             ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGgcgc                                                                                        >  2:618836/1‑100 (MQ=255)
              gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       >  2:208293/1‑100 (MQ=255)
              gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       >  1:3697143/1‑100 (MQ=255)
                 cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCAtt                                                                                     <  2:2567869/99‑1 (MQ=255)
                     ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTAATGCGCCGCAtcaggcc                                                                                <  1:13882/100‑7 (MQ=255)
                     ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCAGCGTCTGAAAAGTTAACGAACATAGGCCTGATGCGGCGCATTAgcat                                                                                >  1:1766129/1‑100 (MQ=255)
                      ggaTTTTATTGATGTGTCCGATCGCAACCCGTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgca                                                                                 <  1:1833654/96‑1 (MQ=255)
                        aTTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc                                                                             <  2:946372/100‑1 (MQ=255)
                         ttttGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgca                                                                            <  2:3825030/100‑1 (MQ=255)
                            tgttgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCa                                                                         <  1:2618798/100‑1 (MQ=255)
                            tgttgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCa                                                                         <  2:1847152/100‑1 (MQ=255)
                            aagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCa                                                                         >  1:3754057‑M1/72‑100 (MQ=255)
                            aagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATCCGGCGCATTagcatcgcatcn                                                                         >  1:3058999‑M1/72‑99 (MQ=255)
                              ttgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  2:3358574/1‑100 (MQ=255)
                              gagataaaaatgggattgagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  2:825528‑M1/70‑100 (MQ=255)
                               tgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGc                                                                      <  2:1017366/100‑1 (MQ=255)
                               agataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGc                                                                      >  2:1627337‑M1/69‑100 (MQ=255)
                                gataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  2:1702025‑M1/68‑100 (MQ=255)
                                   gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                  <  2:752402/100‑1 (MQ=255)
                                   gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                  >  2:1446316/1‑100 (MQ=255)
                                   aaacatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  1:606749‑M1/65‑97 (MQ=255)
                                     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                >  2:1047998/1‑100 (MQ=255)
                                      ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                               <  2:3697169/100‑1 (MQ=255)
                                        cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                             >  2:3267905/1‑100 (MQ=255)
                                        cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                             >  2:4222334/1‑100 (MQ=255)
                                          ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg                                                           <  2:1357742/100‑1 (MQ=255)
                                           tctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGt                                                          >  2:1162899/1‑100 (MQ=255)
                                             ttaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCGTCAGGCAATCAATAATGTCa                                                        >  1:2695068‑M1/55‑100 (MQ=255)
                                               cACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa                                                      >  1:1873341/1‑100 (MQ=255)
                                                aCCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGat                                                     <  1:291187/100‑1 (MQ=255)
                                                 cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                    >  1:2064220/1‑100 (MQ=255)
                                                   cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATg                                                  <  2:902571/100‑1 (MQ=255)
                                                    ttGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa                                                 <  1:961818/100‑1 (MQ=255)
                                                    ttGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa                                                 >  2:269511/1‑100 (MQ=255)
                                                       tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                              >  1:469499/1‑100 (MQ=255)
                                                          tGGTATGGCTGGTCCCGCGTCTGAAAAGTTAACGAACGAAGGCCTGATGCGGCGCAATAGCATCGCATCAGGCAACCAATAATGTCAGATATGAAAAGCg                                           <  1:241283/100‑1 (MQ=255)
                                                          tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAGCGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                           <  1:2770105/100‑1 (MQ=255)
                                                           ggTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCgg                                          >  1:3935252/1‑100 (MQ=255)
                                                             cgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                        >  2:3930298‑M1/39‑100 (MQ=255)
                                                                ngCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     >  1:1344535/2‑100 (MQ=255)
                                                                gtcTGGACCCGCGTCTGAAAAGTTAACGGACGTTGGTCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                      <  2:4202819/97‑1 (MQ=255)
                                                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     <  2:3150831/100‑1 (MQ=255)
                                                                 gCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat                                    <  2:3618297/100‑1 (MQ=255)
                                                                    ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                 <  2:3013977/100‑1 (MQ=255)
                                                                    ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                 <  1:3537013/100‑1 (MQ=255)
                                                                      aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                               <  2:458561/100‑1 (MQ=255)
                                                                       cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                               <  2:181785/99‑1 (MQ=255)
                                                                        ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATg                             >  2:2258877/1‑100 (MQ=255)
                                                                        ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATg                             <  2:2680496/100‑1 (MQ=255)
                                                                         cgcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa                            <  1:92948/100‑1 (MQ=255)
                                                                         cgcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa                            >  1:4028447/1‑100 (MQ=255)
                                                                          gcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa                           <  2:3526774/100‑1 (MQ=255)
                                                                           cgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaaa                          >  2:963436/1‑100 (MQ=255)
                                                                            ctCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAg                         <  1:2154161/99‑1 (MQ=255)
                                                                             tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGc                        >  2:2489442/1‑100 (MQ=255)
                                                                             tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGc                        <  2:1898134/100‑1 (MQ=255)
                                                                              cTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAgag                       >  2:2154168/1‑98 (MQ=255)
                                                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGACAAGCGGAAACATATCGATGAAAg                         >  1:4161083/1‑97 (MQ=255)
                                                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAATATATCGATGAAAGCGAt                     >  1:3179353/1‑100 (MQ=255)
                                                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                      <  1:1232647/99‑1 (MQ=255)
                                                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                     >  1:733472/1‑100 (MQ=255)
                                                                                 aaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc                    >  2:1275291/1‑100 (MQ=255)
                                                                                 aaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc                    <  2:2955679/100‑1 (MQ=255)
                                                                                  aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCt                   >  2:85844/1‑100 (MQ=255)
                                                                                   aaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCtt                  <  1:635189/100‑1 (MQ=255)
                                                                                    aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa                 >  2:3030969/1‑100 (MQ=255)
                                                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                >  1:148263/1‑100 (MQ=255)
                                                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                >  1:3978918/1‑100 (MQ=255)
                                                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa                 >  2:3192895/1‑99 (MQ=255)
                                                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc              <  1:813029/100‑1 (MQ=255)
                                                                                        aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGGATCAGGCAATCAGTAAGGTCCGCTAGGAAAAGCGGAAACATATCGATGAAAGCGAACTTACTcc             >  1:1050257/1‑100 (MQ=255)
                                                                                        aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATcc             >  2:915912/1‑100 (MQ=255)
                                                                                        aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc              >  1:2466997/1‑99 (MQ=255)
                                                                                        aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGAAATGAAAAGCGGAAACATAACCATGAAAGCGATCTTAATcc             >  2:867698/1‑100 (MQ=255)
                                                                                         acgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATccc            >  2:1963170/1‑100 (MQ=255)
                                                                                          cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCa           >  1:554810/1‑100 (MQ=255)
                                                                                             acgTAGGCCTGATGCGGCGCATTAGCATCGTATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt        <  2:1523542/100‑1 (MQ=255)
                                                                                             acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt        >  2:443335/1‑100 (MQ=255)
                                                                                                tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa     >  2:3480144/1‑100 (MQ=255)
                                                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc   <  1:4204562/100‑1 (MQ=255)
                                                                                                   GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCGGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct  <  1:507307‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT  >  NC_000913/1040448‑1040646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.