| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168341 | 16 (0.100) | 14 (0.100) | 10/158 | NT | 49.7% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | NA (NA) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
GCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACG > NC_000913/4168270‑4168444 | ggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAATTGCTTATCACGCAACGCGTGATAAGCaa > 2:2519273‑M1/63‑100 (MQ=255) ggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgt > 1:514304‑M1/61‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTcgtn > 2:2119281‑M1/60‑99 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 2:99165‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 2:4066993‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 2:367409‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 1:2467133‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 1:2749771‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 1:2859197‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 2:2744052‑M1/60‑100 (MQ=255) gattcgaacccctgttaccgccgtgaaagggcggggtcttgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtg > 2:365103‑M1/60‑100 (MQ=255) attcgtgcccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAAGTTTCgtgt > 1:2054931‑M1/59‑100 (MQ=255) attcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtgt > 1:1643585‑M1/59‑100 (MQ=255) attcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtgt > 2:582397‑M1/59‑100 (MQ=255) attcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtgt > 2:3295721‑M1/59‑100 (MQ=255) attcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCgtgt > 1:3061834‑M1/59‑100 (MQ=255) ttcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTc > 2:1199612‑M1/58‑100 (MQ=255) ttcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTc > 2:3957259‑M1/58‑100 (MQ=255) tgattGAGGCAGAAGAGAATACGGCCGTTCGCTTTCTATTAATGTACGCTTACCCTATACGAAACT‑‑‑‑‑ATCACGTATCGCGTGATAAGCAATTTTCTTGTcc < 1:624119/96‑1 (MQ=1) tcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTcc > 2:1705484‑M1/57‑100 (MQ=255) tcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTcc > 1:706973‑M1/57‑100 (MQ=255) tcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTcc > 2:3265755‑M1/57‑100 (MQ=255) tcgaacccctgtgaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTcc > 2:4126619‑M1/57‑100 (MQ=255) cccctgttaccgccgtgaaagggcggtgtcctgggcctctcgccgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCtt > 2:3927780‑M1/52‑99 (MQ=255) tgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAgg > 1:2345587‑M1/37‑100 (MQ=255) ACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAAt > 2:2810698‑M1/1‑100 (MQ=255) ACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAAt > 2:406528‑M1/1‑100 (MQ=255) ACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAAt < 2:193601‑M1/100‑1 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATc < 1:412353‑M1/100‑1 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATc < 2:3151883‑M1/100‑1 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATc < 2:1473827‑M1/100‑1 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATc < 2:3731202‑M1/100‑1 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATc > 1:1691486‑M1/1‑100 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATc > 2:756131‑M1/1‑100 (MQ=255) CACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑ATCGAATc < 1:1211967‑M1/100‑1 (MQ=255) attaCGCAACGCGTGATAAGCAATTTTTGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATTCGAA‑CCCCtgttac < 1:228574/97‑6 (MQ=1) tCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATTCGAA‑CCCCtgttacc < 2:749467/100‑7 (MQ=1) aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATTCGAA‑CCCCtgttaccgc < 2:2251415/100‑9 (MQ=1) aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATTCGAA‑CCCCtgttaccgc < 2:786055/100‑9 (MQ=1) | GCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT‑‑‑‑‑ATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACG > NC_000913/4168270‑4168444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |