| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1208471 = | 74 (0.810) | 15 (0.180) | 5/162 | NT | 20.4% | coding (340/414 nt) | tfaP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1208500 = | 50 (0.600) | coding (369/414 nt) | tfaP | e14 prophage; uncharacterized protein | |||||
GACGGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1208577‑1208471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagtgc‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCAGC > NC_000913/1208500‑1208598 GACGGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTT > 1:2035028/1‑100 ACGGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTC < 1:2532185/100‑1 CGGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCC < 2:2023603/100‑1 GGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCA > 2:849662/1‑100 GGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCA < 2:1015175/100‑1 GCAACATATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAG > 1:1770306/1‑100 GCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAG > 1:411097/1‑100 CAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCGGTTCCAGT > 1:575161/1‑100 CAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGT > 2:1890012/1‑100 AACAGATACCAGCACCACGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGTG < 2:2381023/100‑1 TCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGTGCTT‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGG > 2:566879/1‑100 TCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGTGCTT‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGG > 2:1694902/1‑100 CAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGG > 1:332332/1‑98 TCTGGCGCACTGGATGTATCAACCAGTTCCAGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGT > 2:590502/1‑100 CTGGCGCACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGT > 2:1947993/1‑100 CTGGCGCACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGT > 1:689511/1‑100 TGGCGCACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTA > 2:359040/1‑100 TGGCGCACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTA > 2:1599711/1‑100 GGCGCACTGGATGTATCAACCAGTTCCAGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATC > 1:672993/1‑100 GGCGCACTGGATGTATCAACCAGTTCCAGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATC > 1:2347632/1‑100 GGCGCACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTAT > 2:1492220/1‑100 GGCGCACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTAT > 1:680011/1‑100 GCGCACTGGATGTATCAACCAGTTCCAGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCT > 1:1843449/1‑100 CACTGGAAGTATCGACCAGCTCCAGTGC‑GTCCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGT > 1:1268547/1‑100 GGAAGTATCGACCAGCTCCAGTGC‑G‑CCAGATATTGAATGGCCTACTCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCG > 1:98094/1‑100 CCAGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAA < 2:856376/100‑1 AGTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATC > 2:1583424/1‑100 GTGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATC > 2:926449/1‑99 TGC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCA < 2:1686782/100‑1 GC‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCAG > 2:1644344/1‑100 C‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCCGC > 1:2138473/1‑100 C‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCAGC > 2:2315271/1‑100 GACGGCAACAGATACCAGCACCGCGCCGGATGTCATCTGGCCTGAACTGCCGGAGGCGTAGGCCATTCAATATCTGGCGCACTGGATGTATCAACCAGTTCCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1208577‑1208471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagtgc‑G‑CCAGATATTGAATGGCCTACGCCTCCGGCAGTTCAGGCCAGATGACATCCGGCGCGGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCAGC > NC_000913/1208500‑1208598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |