Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_000913 1,597,236 Δ7 bp 25.8% pseudogene (746‑752/3861 nt) yneO ← pseudogene, AidA homolog

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 159723552 (0.570)17 (0.190) 15/174 NT 25.8% pseudogene (753/3861 nt) yneO pseudogene, AidA homolog
?NC_000913 1597243 = 47 (0.520)pseudogene (745/3861 nt) yneO pseudogene, AidA homolog

TTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1597149‑1597235
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTT  >  NC_000913/1597243‑1597341
                                                                                                                                                                                          
TTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGT                                                                                        <  1:2049109/100‑1
    TAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCG                                                                                    <  1:2300436/100‑1
         AGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACC                                                                               <  2:344809/100‑1
          GTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCG                                                                              >  2:74736/1‑100
           TCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGG                                                                             <  1:2035266/100‑1
             CATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTG                                                                           <  2:1985701/100‑1
                TATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCA                                                                        <  2:25553/100‑1
                 ATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCAa                                                                       >  1:1345336/1‑99
                         TATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCG                                                               >  1:608705/1‑100
                         TATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCG                                                               >  1:924092/1‑100
                              ACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCAATGCCACCGGTAtc                                                          <  2:1345344/100‑3
                                                  TCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCA                                      <  1:1787952/100‑1
                                                   CCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA                                     >  1:2257228/1‑100
                                                    CATTATAGAGTCTGCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC                                    >  1:1142594/1‑100
                                                                 GCGTACCGTGATGACAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAA                       <  2:753451/100‑1
                                                                     ACCGTGGTGACAGGGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCGCCGATAATGGTATTTTCAGCCGTAACCAGCCCCCCCTCGCGAATAG                    <  1:474085/99‑1
                                                                               CAGAGTCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCA         >  2:1343622/1‑100
                                                                                    TCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGCAACCAA‑CCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCT   <  1:1178414/100‑1
                                                                                     CTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACTCACCCTCGCGAATAGTCGCCTCCCCAGTTCCT   >  1:1308874/1‑100
                                                                                      TGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTT  >  2:1135862/1‑100
                                                                                      TGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCT   <  1:739261/99‑1
                                                                                                                                                                                          
TTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1597149‑1597235
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTT  >  NC_000913/1597243‑1597341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.