| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913 | 1,597,236 | Δ7 bp | 25.8% | pseudogene (746‑752/3861 nt) | yneO ← | pseudogene, AidA homolog |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1597235 | 52 (0.570) | 17 (0.190) | 15/174 | NT | 25.8% | pseudogene (753/3861 nt) | yneO | pseudogene, AidA homolog |
| ? | NC_000913 | 1597243 = | 47 (0.520) | pseudogene (745/3861 nt) | yneO | pseudogene, AidA homolog | |||||
GAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCA > NC_000913/1597137‑1597334 | gAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCtt < 1:2438844/100‑1 (MQ=255) atatTCTTTGTTATTAATCAGTCCATTATTGGCAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGa < 1:359939/100‑1 (MQ=255) atatTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGa < 2:551368/100‑1 (MQ=255) tatTCTTTGTTATTAACCGGTCCATTATTGGAAATATTGTCTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGAt < 2:926066/100‑1 (MQ=255) ttCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATcc < 1:2291752/100‑1 (MQ=255) ttGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGca < 1:961888/100‑1 (MQ=255) ttGTTATTAATCAGTCCATTATTGGAAATAGTGACTGTGCCATTACCGAAATATCCATTATAGATTCTGCGTACCGTGATGACAGAGTCTTGATCCTGca < 1:2244843/100‑1 (MQ=255) tGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGcac < 2:240170/100‑1 (MQ=255) tGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGcac > 2:2279634/1‑100 (MQ=255) tGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGcac > 2:1807584/1‑100 (MQ=255) gTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGcaca > 2:262380/1‑100 (MQ=255) ttattaATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggt < 1:2049109‑M1/100‑14 (MQ=255) taATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccg < 1:2300436‑M1/100‑18 (MQ=255) aaTCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAgg > 1:821226/1‑100 (MQ=255) aaTCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAgg < 1:1642991/100‑1 (MQ=255) tCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGt > 1:674179/1‑100 (MQ=255) aGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgatacc < 2:344809‑M1/100‑23 (MQ=255) aGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTc > 2:1389972/1‑100 (MQ=255) gTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccg > 2:74736‑M1/1‑77 (MQ=255) gTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTcc < 1:1807574/100‑1 (MQ=255) gTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTcc < 2:1209938/100‑1 (MQ=255) tCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccgg < 1:2035266‑M1/100‑25 (MQ=255) cATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtg < 2:1985701‑M1/100‑27 (MQ=255) cATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGAt < 1:1726312/100‑1 (MQ=255) cATTATTAGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGAt < 1:1932600/100‑1 (MQ=255) ttattGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATAc > 2:1723036/1‑100 (MQ=255) tattGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggca < 2:25553‑M1/100‑30 (MQ=255) attGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcaa > 1:1345336‑M1/1‑70 (MQ=255) ggAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGt > 1:997331/1‑99 (MQ=255) ggAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTg > 2:2340277/1‑100 (MQ=255) ggAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTg > 2:1040488/1‑100 (MQ=255) ggAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTg > 1:403526/1‑100 (MQ=255) gAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTgg < 2:1607287/100‑1 (MQ=255) gAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTgg > 1:1167638/1‑100 (MQ=255) tatTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcattgccaccg > 1:608705‑M1/1‑62 (MQ=255) tatTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcattgccaccg > 1:924092‑M1/1‑62 (MQ=255) tatTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTACGATACCGGTGGCAtt > 2:2390956/1‑100 (MQ=255) gACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCa > 2:530363/1‑100 (MQ=255) gACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCa < 2:2159674/100‑1 (MQ=255) gACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCa > 1:340581/1‑100 (MQ=255) aCTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcaatgccaccggtatc < 2:1345344‑M1/100‑44 (MQ=255) tgtgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCg < 2:1108249/100‑1 (MQ=255) tgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGTTCCTGCACATTCAGGGTTCCGATACCGGTGGCAATGCCACCggt < 1:925688/100‑3 (MQ=255) tgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGAt > 2:455816/1‑100 (MQ=255) cATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCAATGCCACCGGTatn < 1:577121/100‑3 (MQ=255) cATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCAATGCCACCGGTatc < 2:1437424/100‑3 (MQ=255) ttACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCAATGCCACCGGTatc < 1:1172623/98‑3 (MQ=255) tcaCCGAGATATCCATTATAGAGTCTGCTTACCGTGACGAGAGGCGCTTGCTCCTGCACATTCAGCGTTCCGATACCGGTGTCAATGCCACCGGTatcg < 1:2418330/97‑4 (MQ=255) gAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTAttt < 1:115995/100‑1 (MQ=255) tCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaacca < 1:1787952‑M1/100‑64 (MQ=255) ccATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaa > 1:2257228‑M1/1‑36 (MQ=255) cATTATAGAGTCTGCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaac > 1:1142594‑M1/1‑35 (MQ=255) ttATAGGGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCGGCCGTa < 1:1988995/99‑1 (MQ=255) tataGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTaac < 2:2202334/100‑1 (MQ=255) agagTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTaaccaa > 1:2118084/1‑100 (MQ=255) gagTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTaaccaac < 1:1939686/100‑1 (MQ=255) nccTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAccc > 2:2398172/3‑100 (MQ=255) tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAcccc < 2:590308/100‑1 (MQ=255) tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAcccccc < 2:1167642/100‑1 (MQ=255) gCGTACCGTGATGACAGAGTCTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaaccccccctcgcgaa < 2:753451‑M1/100‑79 (MQ=255) gCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAccccccc > 2:10777/1‑100 (MQ=255) cGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCt < 2:1395763/100‑1 (MQ=255) tACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTcg > 2:460635/1‑100 (MQ=255) aCCGTGGTGACAGGGTCTgcacattcagggttccgataccggtggcattgccgccgataatggtattttcagccgtaaccagccccccctcgcgaatag < 1:474085‑M1/99‑82 (MQ=255) ccGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTcgcg > 2:1493390/1‑100 (MQ=255) cGTGATGCCAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGa > 2:1362939/1‑100 (MQ=255) ntgatgaCAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGaa > 1:403715/2‑100 (MQ=255) gTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGaa > 1:720506/1‑100 (MQ=255) tgaCAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTGTCAGCCGTAACCAACCCCCCCTCGCGACTAGt > 2:41340/1‑100 (MQ=255) gaCAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTc < 1:13816/100‑1 (MQ=255) cAGAGTCTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaaccccccctcgcgaatagtcgcctcccca > 2:1343622‑M1/1‑8 (MQ=255) cAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGc > 1:633936/1‑100 (MQ=255) cAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGc > 2:223953/1‑100 (MQ=255) agTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTc < 2:821229/100‑1 (MQ=255) gTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTcc > 2:64780/1‑100 (MQ=255) tCTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgcaaccaacccccctcgcgaatagtcgcctccccagttcct < 1:1178414‑M1/100‑98 (MQ=255) cTgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaactcaccctcgcgaatagtcgcctccccagttcct > 1:1308874‑M1/1‑2 (MQ=255) tgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaaccccccctcgcgaatagtcgcctccccagttcctt > 2:1135862‑M1/1‑1 (MQ=255) tgcacattcagggttccgataccggtggcattgccaccgataatcgtattttcagccgtaaccaaccccccctcgcgaatagtcgcctccccagttcct < 1:739261‑M1/99‑99 (MQ=255) | GAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCA > NC_000913/1597137‑1597334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |