| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2340313 = | NA (NA) | 8 (0.090) | 5/164 | NT | NA | noncoding (1/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2340346 = | NA (NA) | noncoding (34/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2340418‑2340313‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAC > NC_000913/2340346‑2340444 AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA < 2:811766/100‑1 ATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCAT < 1:1045053/100‑1 ATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCAT > 2:1916984/1‑100 TCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTGCGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC > 1:2444194/1‑100 TCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC > 2:2147581/1‑100 TCACTGTCTAGTCGGCACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC < 2:2429508/100‑1 CACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA < 1:645260/100‑1 ACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG < 2:1993925/100‑1 ACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAn < 2:1555014/100‑2 ACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG < 2:1443390/100‑1 ACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG < 2:1380957/100‑1 ACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG > 2:1377415/1‑100 CTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG > 2:753635/1‑100 CTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG < 2:2409969/100‑1 AGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGCCGCATCAGGCCTtg > 1:1771524/1‑97 CATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCC > 1:1433523/1‑100 TAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAG > 1:2066757/1‑100 AGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGA > 2:2235993/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAC > 1:1027794/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAC > 2:716319/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTAGAC > 2:577803/1‑100 CCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAG > 1:119491/1‑100 CCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAG > 1:1375843/1‑100 ATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGAC < 2:914888/100‑1 ATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGAC > 1:2272483/1‑100 CAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAA > 1:865604/1‑100 GGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAA > 2:1625199/1‑99 CCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAC < 2:1527837/100‑1 CCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAC > 2:1017509/1‑100 AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2340418‑2340313‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAC > NC_000913/2340346‑2340444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |