BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2340313 =	NA (NA)	8 (0.090)	5/164	NT	NA	noncoding (1/82 nt)	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	2340346 =	NA (NA)	8 (0.090)	5/164	NT	NA	noncoding (34/82 nt)	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 125 total aligned reads displayed.

CAACCCGATCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAC  >  NC_000913/2340214‑2340411

gtttttgtcgatgacggtgaaatggtaatcactgtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagg                                                                                                    <  2:1527837‑M1/1‑1 (MQ=255)

   tttgtcgatgacggtgaaatggtaatcactgtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGcc                                                                                                  >  2:1625199‑M1/97‑99 (MQ=255)

   cccGATCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCt                                                                                                 >  1:1221904/1‑100 (MQ=255)

    ttgtcgatgacggtgaaatggtaatcactgtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTg                                                                                                >  1:865604‑M1/96‑100 (MQ=255)

    ccGATCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTg                                                                                                <  2:801762/100‑1 (MQ=255)

      gtcgatgacggtgaaatggtaatcactgtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGAt                                                                                              <  2:914888‑M1/7‑1 (MQ=255)

      gtcgatgacggtgaaatggtaatcactgtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGAt                                                                                              >  1:2272483‑M1/94‑100 (MQ=255)

      gATCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGAt                                                                                              <  2:115499/100‑1 (MQ=255)

       aTCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATg                                                                                             <  1:2301450/100‑1 (MQ=255)

        tCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGc                                                                                            <  1:1998342/100‑1 (MQ=255)

         cACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCg                                                                                           >  1:2444592/1‑100 (MQ=255)

           cTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATCTGCTGCACACGCAGAATAAGTGGGGTTGATGTTTGGCCGCGCCAATTCCTGATGCg                                                                                           >  1:608590/1‑98 (MQ=255)

            tAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACg                                                                                        >  1:1839375/1‑100 (MQ=255)

             actACTTTTAAACTCGGCCCAGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGGGAGGTGGATGTTTGGCCGCGCCAATGCCTTGTGCg                                                                                           >  1:1520962/3‑96 (MQ=255)

             aaTACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGc                                                                                       >  2:522618/1‑100 (MQ=255)

             aaTACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGc                                                                                       <  2:1051728/100‑1 (MQ=255)

              aTACTTTTAAACTCGGCCCCGGCGTGGATGTGCACTATATGCTGCACACGCATAATAAGTGAAGTTAATAATAGGACTCGCCAATGACTGATGCGAGGCt                                                                                      >  2:728945/1‑100 (MQ=255)

                 cTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGc                                                                                   >  2:1103522/1‑100 (MQ=255)

                 cTTTTAAACTCGGCCCCGGCGTGGATATGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGc                                                                                   >  2:1582439/1‑100 (MQ=255)

                 cTTTTAAACTCGGCCACGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGc                                                                                   >  2:1129361/1‑100 (MQ=255)

                   tttAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGcc                                                                                  <  2:2090888/99‑1 (MQ=255)

                   tttAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCcg                                                                                 >  2:2251733/1‑100 (MQ=255)

                   tttAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCcg                                                                                 <  1:717204/100‑1 (MQ=255)

                       accTCGGCCCCGGCGTGGATGTTACCTATATCCTGCCCACGCAGAATAGGTGAGGTTGGTGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTc                                                                             <  1:142751/98‑1 (MQ=38)

                       aaCTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTc                                                                             <  1:188932/100‑1 (MQ=255)

                        aCTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCt                                                                            >  2:1497793/1‑100 (MQ=255)

                         cTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                           >  2:2354977/1‑100 (MQ=255)

                         cTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                           >  1:2091109/1‑100 (MQ=255)

                         cTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                           <  2:882336/100‑1 (MQ=255)

                            ggCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                        <  2:1899042/100‑1 (MQ=255)

                             gCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                       >  2:2424517/1‑100 (MQ=255)

                               ctgtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                     >  1:119491‑M1/69‑100 (MQ=255)

                                ccGGCGCGGATGTGAACTATATGCTGCACACGCAGCATAAGTGCGGTTGATGTTTGGCCGCGCCAACGCCTGATCCGAGGCTTGCCGCGTCTTATCAgg                                                                     >  1:2134024/1‑99 (MQ=37)

                                 gtctagtcggcactgttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                   >  2:577803‑M1/67‑100 (MQ=255)

                                 gtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                   >  1:1027794‑M1/67‑100 (MQ=255)

                                 gtctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                   >  2:716319‑M1/67‑100 (MQ=255)

                                  ggCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                  >  1:2100662/1‑100 (MQ=255)

                                   ctagtcggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                 >  1:2066757‑M1/65‑100 (MQ=255)

                                       ggATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaaa                                                             <  1:1004875/100‑1 (MQ=255)

                                       ggATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaaa                                                             <  1:896134/100‑1 (MQ=255)

                                        gATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAt                                                            <  2:773027/100‑1 (MQ=255)

                                         ggcacggttgccggatgcggcgtaaacgccttatccggcctacggggagcatttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATg                                                           >  1:1433523‑M1/59‑100 (MQ=255)

                                          tgtgAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTACAAATGc                                                          <  1:360392/100‑1 (MQ=255)

                                            tgAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTTGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTc                                                        <  1:2143801/100‑1 (MQ=255)

                                             gAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTcc                                                       <  2:2317705/100‑1 (MQ=255)

                                             gAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTcc                                                       <  1:95203/100‑1 (MQ=255)

                                              aaCTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTccc                                                      >  1:870869/1‑100 (MQ=255)

                                              aaCTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTccc                                                      >  1:2315579/1‑100 (MQ=255)

                                              aaCTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTccc                                                      >  2:1250570/1‑100 (MQ=255)

                                              aaCTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTccc                                                      <  2:337454/100‑1 (MQ=255)

                                              aaCTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTccc                                                      <  2:534429/100‑1 (MQ=255)

                                                cTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCGGGCCTACAAATGCTCCCCg                                                    >  1:1330118/1‑100 (MQ=255)

                                                  atatGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTa                                                  >  2:449902/1‑100 (MQ=255)

                                                  atatGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTa                                                  >  2:2150523/1‑100 (MQ=255)

                                                    atGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCTCCGTAgn                                                <  2:1363092/100‑2 (MQ=255)

                                                    atGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAgg                                                >  1:493353/1‑100 (MQ=255)

                                                        tgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCgg                                            <  2:1352099/100‑1 (MQ=255)

                                                              cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                      >  2:224124/1‑100 (MQ=255)

                                                              cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                      >  1:2035055/1‑100 (MQ=255)

                                                                    aTAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTa                                <  1:2053743/100‑1 (MQ=255)

                                                                     tAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc                               <  1:132748/100‑1 (MQ=255)

                                                                     tAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc                               >  2:733058/1‑100 (MQ=255)

                                                                      aaGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcg                              <  2:2578765/100‑1 (MQ=255)

                                                                       aGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgc                             <  1:902507/100‑1 (MQ=255)

                                                                       aGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgc                             >  1:175431/1‑100 (MQ=255)

                                                                        gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                            <  1:823854/100‑1 (MQ=255)

                                                                        gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                            <  1:1011306/100‑1 (MQ=255)

                                                                        gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                            >  2:1540985/1‑100 (MQ=255)

                                                                        gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                            <  1:823700/100‑1 (MQ=255)

                                                                        gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGACGCGTCGTGTCAAAGGTAAAAGTGCTTTGCGCAGTCCGGGTGATGCGTTTAcgc                             >  1:1542862/1‑99 (MQ=12)

                                                                           aGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCa                         <  2:49457/100‑1 (MQ=255)

                                                                             gTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATGCGGCGTAAAcgccttatc                       <  2:1632156/100‑6 (MQ=25)

                                                                             gTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATc                       >  2:1185683/1‑100 (MQ=255)

                                                                               tGATGTTTGGCCGCGCCAATGCCTGATGCGACGCGTGCCGCGTCTTATCAGGCCTACAAATACTCCCCGTAGGCCGGATGCGGCGTAAACGCCTTATcc                      <  1:1378203/99‑1 (MQ=21)

                                                                                gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                    <  2:203631/100‑1 (MQ=255)

                                                                                gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                    <  2:1311708/100‑1 (MQ=255)

                                                                                 aTGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                   >  2:1121217/1‑100 (MQ=255)

                                                                                  tGTTTGGCCGCGCTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                   <  1:2451457/99‑1 (MQ=255)

                                                                                   gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcct                 <  2:100606/100‑3 (MQ=21)

                                                                                   gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                 <  2:196887/100‑1 (MQ=255)

                                                                                   gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                  <  2:2444609/99‑1 (MQ=255)

                                                                                       ggCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGt             >  2:1891453/1‑100 (MQ=255)

                                                                                        gCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg            >  1:166950/1‑100 (MQ=255)

                                                                                         ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc           >  1:1452689/1‑100 (MQ=255)

                                                                                          cgcgCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGcc          <  2:1342795/100‑1 (MQ=255)

                                                                                           gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg         <  1:105699/100‑1 (MQ=255)

                                                                                           gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg         >  1:2551213/1‑100 (MQ=255)

                                                                                           gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg         <  2:524377/100‑1 (MQ=255)

                                                                                           gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg         <  1:1966089/100‑1 (MQ=255)

                                                                                            cgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGa        <  2:2032795/100‑1 (MQ=255)

                                                                                            cgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGa        >  1:2553612/1‑100 (MQ=255)

                                                                                             gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGAc       <  2:807789/100‑1 (MQ=255)

                                                                                             gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAACGCGTTTACGCCGCATCCGGCAACCGTGCCGAc       <  2:2458634/100‑1 (MQ=255)

                                                                                              ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt      <  1:2587990/100‑1 (MQ=255)

                                                                                              ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt      <  2:2455955/100‑1 (MQ=255)

                                                                                              ccAATGCCTGATGCGACGCTTGCCGCGTCGTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAATGCGTTTACGCCGCATCCGGCAACCGTGCCGACt      <  1:1558834/100‑1 (MQ=255)

                                                                                               caagGCCTGATGCGGCGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt      >  1:1771524‑M1/5‑99 (MQ=255)

                                                                                               cAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGGCGTATAAGGAGTTTACGCCGCATCCGGCAACCGTGCCGACTa     >  1:1814941/1‑100 (MQ=255)

                                                                                                  tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc  <  1:2497720/100‑1 (MQ=255)

                                                                                                  tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc  <  1:1891681/100‑1 (MQ=255)

CAACCCGATCACTAATACTTTTAAACTCGGCCCCGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAC  >  NC_000913/2340214‑2340411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.