New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2662534NA (NA)12 (0.150)
+CGTTTGTAG		 6/160 NT NA noncoding (226/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 3392342 NA (NA)noncoding (267/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences

CGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2662471‑2662534
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACGGAA  <  NC_000913/3392342‑3392300
                                                                |||||||||                                           
CGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATC                  <  2:913176/100‑1
 ggCGCATCAGGCAACGGCTGTCGGATGCGGCATAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCA                 <  1:218975/98‑1
   CGCATCAGGCAATGGCTGCCGGATGTGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGG               <  2:2080068/100‑1
   CGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGG               <  1:1637742/100‑1
   CGCATCAGGCAACGGCTGCCGGATGCGTCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGG               <  1:603763/100‑1
    GCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGGC              <  1:1917872/100‑1
     CATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGGCC             <  1:1938448/100‑1
     CATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGGCC             <  2:369386/100‑1
      ATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGGCCT            <  2:1653170/100‑1
       TCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTA           <  2:481035/100‑1
        CAGGCGACGGCTGCCGGATGCGGCGGAAACGCCTTATCCGACCTAGGGTTAGGTTCCGTTTGTAGGCCTGATGCGACGCTGTGCGTCTTATCAGG               <  1:1716734/95‑1
                 GCTGCCGGAGGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTCTGTAGGACTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACGGAA  <  1:614873/99‑1
                                                                |||||||||                                           
CGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2662471‑2662534
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACGGAA  <  NC_000913/3392342‑3392300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.