New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3313257 =	NA (NA)	7 (0.080)	4/166	NT	NA	noncoding (6/77 nt)	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3313287 =	NA (NA)					noncoding (36/77 nt)	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences

TCCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3313361‑3313257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  >  NC_000913/3313287‑3313385                                                                                                                                                                                                              TCCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTA                                                                                                          <  2:65031/100‑1  CCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTAT                                                                                                         >  1:2004250/1‑100   CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  2:1895857/100‑1   CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  2:1768762/100‑1   CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  2:1395391/100‑1   CAACGTACCATTGCTTAAGGTTTTTAGGGATCCATGCGGGATAAGGCGTTTCCGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  1:2440701/100‑1    acCGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCA                                                                                                       <  1:174969/98‑1     ACGTGCCATGGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAG                                                                                                      <  1:504525/100‑1                                                                           GCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTAC                                >  2:1901174/1‑100                                                                           GCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTAC                                >  2:1011659/1‑100                                                                           GCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGATAC                                >  1:762754/1‑100                                                                            CCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACG                               >  1:1685951/1‑100                                                                             CTGATGTGACGCTGGCGCGTCACATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGT                              >  1:386921/1‑100                                                                             CTGATGTGACGCTGGCGCGTCACATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGT                              >  2:1969809/1‑100                                                                              TGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGT                              >  1:126119/1‑99                                                                                               tccgatctAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCG            <  1:172459/92‑1                                                                                                     TCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACT      >  2:1308939/1‑100                                                                                                       AGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAgatcgga    >  2:172460/1‑93                                                                                                       AGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTC    <  2:1724089/100‑1                                                                                                        GGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCG   >  2:1891994/1‑100                                                                                                         GCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  >  2:1270889/1‑100                                                                                                                                                                                                              TCCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3313361‑3313257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  >  NC_000913/3313287‑3313385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.