New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3423259 =126 (1.370)88 (1.070) 55/160 NT 58.3% intergenic (+65/+164) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 4213156 = 13 (0.160)noncoding (117/120 nt) rrfE 5S ribosomal RNA of rrnE operon

Only 100 of 112 total aligned reads displayed.

GTCGGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3423366‑3423259
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgccagGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCC  >  NC_000913/4213156‑4213252
                                                                                                                                                                                                             
GTCGGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAA                                                                                                           <  2:330817/100‑1
   GGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACT                                                                                                        >  1:667240/1‑100
   GGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACT                                                                                                        >  1:90185/1‑100
   GGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACT                                                                                                        >  2:1384411/1‑100
    GTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG                                                                                                       >  2:212848/1‑100
    GTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG                                                                                                       >  2:627884/1‑100
      GAACACTCTCCCGAGTAGGACAAATCCGCCGGGGGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGAGGCGGGCAGGACGCCCGCCATAAACTGCC                                                                                                     >  1:1712724/1‑100
      GAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCAGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC                                                                                                     >  2:1825712/1‑100
        ACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAAGCCCGCAATAAAgagaaa                                                                                                    >  2:2424116/1‑93
         CACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG                                                                                                   <  2:763585/99‑1
            tctgcgGAGCAGGACAACTCCGGCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAAC                                                                                                         <  1:2567759/84‑1
                  GAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATT                                                                                         >  1:60474/1‑100
                  GAGTAGGACAAATCCGCCGGCAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATT                                                                                         >  1:1581897/1‑100
                   AGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA                                                                                        <  1:1315252/100‑1
                    GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGTCATCAAATTA                                                                                        <  1:2158906/99‑1
                    GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAG                                                                                       <  2:1227438/100‑1
                      AGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAA                                                                                     >  1:453041/1‑100
                      AGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAA                                                                                     >  1:2346168/1‑100
                      AGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAA                                                                                     <  2:2371186/100‑1
                      AGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAA                                                                                     <  1:332016/100‑1
                      AGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAA                                                                                     >  1:453535/1‑100
                       GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAA                                                                                    <  1:155536/100‑1
                       GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAA                                                                                    >  2:1350121/1‑100
                       GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAA                                                                                    >  2:2115259/1‑100
                       GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAA                                                                                    >  1:2302627/1‑100
                          CAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAAC                                                                                 >  2:518790/1‑100
                           AAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACC                                                                                <  1:697522/100‑1
                            AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCC                                                                               >  1:2013317/1‑100
                            AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCC                                                                               >  2:462775/1‑100
                             ATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCC                                                                              <  2:1190636/100‑1
                               CCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCC                                                                              <  2:1191014/98‑1
                                CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGT                                                                           <  2:404237/100‑1
                                CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGT                                                                           >  2:447862/1‑100
                                CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGT                                                                           >  2:635282/1‑100
                                  CCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCC                                                                         <  2:287591/100‑1
                                   CGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCC                                                                         <  1:1278750/99‑1
                                       AGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAG                                                                    >  2:203276/1‑100
                                       AGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAG                                                                    <  2:83379/100‑1
                                        GCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG                                                                   >  2:2191942/1‑100
                                          GGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCC                                                                 <  2:904526/100‑1
                                             TTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGGGGGCAGGACGCCCGCCATAAACTGCCAGGAAAAAAAAAAGAAAAACCCCGGTCCATAAGGCCGGG                                                              <  1:1139259/100‑1
                                             TTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGG                                                              >  1:1249890/1‑100
                                             TTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGG                                                              >  1:513245/1‑100
                                              TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGG                                                             <  2:952550/100‑1
                                              TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGG                                                             >  1:56397/1‑100
                                               TGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGT                                                            >  1:2524239/1‑100
                                               TGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGACATCAAATTAGAAAAACCCCGGTCCATAAGGCAGGGGT                                                            >  2:1986811/1‑100
                                                  ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTT                                                         >  2:2123689/1‑100
                                                   CGTTGCGCAGCAACGGCCCGGAGGGTGGCGGGCGGGACGCCCGCCATAACCTGCCACGCATCAAATTAGAAAAACCCCGGTCCATAAGCCCGCGGTT                                                           >  1:1553534/1‑97
                                                     TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTG                                                      <  1:292429/100‑1
                                                     TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTG                                                      <  1:376605/100‑1
                                                      TGCGAAGCAACGGCCCGGAGGGTGGCNGGCANGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCTCGGTCCATAAGGCCGGGGGNTTTTGC                                                     >  2:2101204/1‑100
                                                      TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGC                                                     <  1:736639/100‑1
                                                      TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGC                                                     <  1:99485/100‑1
                                                       GCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCA                                                    >  1:1345054/1‑100
                                                       GCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGC                                                     <  1:584990/99‑1
                                                        CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCAT                                                   <  2:413575/100‑1
                                                         gacgtatCGGCCCGGAGGGGGGCGGGCAGGACGTGCGCCATAAACTGCCAGGCATCAAATTAGAAAACCCCCGGTCCATAAGGCCGGGGTTTTTTGCAT                                                   <  2:568543/92‑1
                                                         GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATA                                                  <  2:757561/100‑1
                                                         GAAGAAGCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATA                                                  <  1:2184963/100‑1
                                                            GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCA                                               >  1:400350/1‑100
                                                              AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAAT                                             >  2:18103/1‑100
                                                                  GCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATT                                         >  2:2432644/1‑100
                                                                  GCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATT                                         <  2:609739/100‑1
                                                                    CCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTG                                       <  1:1136914/100‑1
                                                                       GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCAT                                    >  2:626062/1‑100
                                                                        AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATG                                   <  1:1308885/100‑1
                                                                          GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGAT                                 >  1:1233368/1‑100
                                                                           GTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATG                                >  2:682406/1‑100
                                                                            TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATACGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGA                               >  2:582016/1‑100
                                                                            TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGA                               >  1:484738/1‑100
                                                                            TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGA                               >  1:1229238/1‑100
                                                                            TGGCGGGCAGGACGCACGCCATAAACTGCAAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGAATGAT                                 >  1:2199948/1‑98
                                                                              GCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAG                             >  2:384634/1‑100
                                                                               CGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGG                            <  2:2578500/100‑1
                                                                                 GGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGA                          <  1:837847/100‑1
                                                                                 GGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGA                          <  2:1233372/100‑1
                                                                                  gaAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAA                         <  1:1038053/98‑1
                                                                                  GCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAA                         >  2:1296575/1‑100
                                                                                    gtcctGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATC                       >  2:682985/6‑100
                                                                                    AGGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGG                            <  1:472909/95‑1
                                                                                     GGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCT                      >  1:879732/1‑100
                                                                                     GGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCT                      >  2:134286/1‑100
                                                                                     GGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCT                      >  2:599761/1‑100
                                                                                     GGACGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCT                      >  1:310925/1‑100
                                                                                        CGCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAT                   >  2:1814149/1‑100
                                                                                         GCCCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATG                  >  2:1967267/1‑100
                                                                                           CCGCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTC                <  1:1103893/100‑1
                                                                                             GCCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAG              >  2:567710/1‑100
                                                                                              CCATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGT             >  2:1981845/1‑100
                                                                                                ATAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTC           <  1:2379682/100‑1
                                                                                                  AAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTG         <  2:2118082/100‑1
                                                                                                   AACAGCGAGGCAGGAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTGTTGCATATCAAGTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTG         <  1:1904149/99‑1
                                                                                                    ACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTA       <  1:1981834/100‑1
                                                                                                    ACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTA       <  2:1565245/100‑1
                                                                                                    ACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTA       <  1:1575538/100‑1
                                                                                                    ACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTA       <  1:887734/100‑1
                                                                                                    ACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTA       <  2:799177/100‑1
                                                                                                      TGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATA     >  1:2029998/1‑100
                                                                                                         CAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCC  >  1:1323472/1‑100
                                                                                                                                                                                                             
GTCGGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3423366‑3423259
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgccagGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCC  >  NC_000913/4213156‑4213252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.