| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3555802 | NA (NA) | 10 (0.120) | 9/162 | NT | NA | noncoding (7/24 nt) | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3555812 | NA (NA) | noncoding (17/24 nt) | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3555696‑3555802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTT < NC_000913/3555812‑3555714 TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGCTGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTCTACGTTTA > 1:146369/1‑100TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTA > 2:565031/1‑100TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTA > 2:408277/1‑100TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTCTACGTTTA > 1:145641/1‑100 CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAG > 2:2565755/1‑100 CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTA < 2:1622396/99‑1 CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGACGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAG < 1:1818354/100‑1 GCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCC < 1:565029/100‑1 CAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCG < 2:2015271/100‑1 CAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCG < 1:278061/100‑1 AGAAACTCGGCGTGGCCCATCGCCTGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCG > 2:2408456/1‑100 GCGTGGCCCATCGCCTGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGC < 1:2408441/100‑1 GCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGC < 1:2544078/100‑1 GCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGC < 2:2566739/100‑1 GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTA < 2:1479755/100‑1 GGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTAAA < 2:2367554/100‑1 ctTCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTAAACTTA < 1:1874709/98‑1 TCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTAAACTTAag > 2:1874719/1‑98 CAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTAAACTTACACGCCGTACCCCATCAT > 2:2455402/1‑100 AAGTTTAGCCGGATAACGCGCCAGATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGG > 1:1086149/1‑100 AGTTTAGCCGGATAACGCGCCAGATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCCATGGG > 1:599866/1‑100 AGCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCCGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACG > 2:1074813/1‑100 AGCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACG > 1:1241077/1‑100 GCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCCTCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACG > 2:459338/1‑99 GCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCCATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACG < 1:1414123/99‑1 GATCTGGGGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG < 1:91826/100‑1 GATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG < 2:2093300/100‑1 GATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG < 1:1063664/100‑1 TCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTT < 2:718919/100‑1 TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3555696‑3555802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTT < NC_000913/3555812‑3555714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |