New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3555802NA (NA)10 (0.120) 9/162 NT NA noncoding (7/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3555812 NA (NA)noncoding (17/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 136 total aligned reads displayed.

TGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTC  >  NC_000913/3555705‑3555901
                                                                                                 |                                                                                                   
tGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATaa                                                                                                   >  2:1624889/1‑100 (MQ=255)
   aTCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAcgc                                                                                                >  1:908503/1‑100 (MQ=255)
     cAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGCTAAcgcg                                                                                               >  1:2556372/1‑99 (MQ=255)
     cAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACgcgc                                                                                              >  1:1884650/1‑100 (MQ=255)
     cAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACgcgc                                                                                              <  1:1651590/100‑1 (MQ=255)
      aGAAACTCGGCGTGGCCCATCGCCTGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcg                                                                                             >  2:2408456‑M1/1‑92 (MQ=255)
      aGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGcc                                                                                             <  2:683006/100‑1 (MQ=255)
       gAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCa                                                                                            <  2:978192/100‑1 (MQ=255)
         aaCTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGa                                                                                          <  2:718919‑M2/100‑2 (MQ=255)
           cTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatc                                                                                        <  1:1063664‑M2/100‑4 (MQ=255)
           cTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatc                                                                                        <  2:2093300‑M2/100‑4 (MQ=255)
           cTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCCCCAGatc                                                                                        <  1:91826‑M2/100‑4 (MQ=255)
               gCGTGGCCCATCGCCTGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggc                                                                                    <  1:2408441‑M1/100‑18 (MQ=255)
               gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggc                                                                                    <  2:2566739‑M1/100‑18 (MQ=255)
               gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggc                                                                                    <  1:2544078‑M1/100‑18 (MQ=255)
                cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggct                                                                                   >  1:1241077‑M2/1‑92 (MQ=255)
                cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGAGGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggc                                                                                    >  2:459338‑M2/1‑92 (MQ=255)
                cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCGGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggct                                                                                   >  2:1074813‑M2/1‑92 (MQ=255)
                cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATGGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggc                                                                                    <  1:1414123‑M2/99‑8 (MQ=255)
                 gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggcta                                                                                  <  2:1479755‑M1/100‑20 (MQ=255)
                 gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                  >  2:1676762/1‑100 (MQ=255)
                   ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaa                                                                                <  2:2367554‑M1/100‑22 (MQ=255)
                    gCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                <  1:326474/99‑1 (MQ=255)
                     cccATGGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTatccggctaaact                                                                              >  1:599866‑M2/1‑87 (MQ=255)
                     cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAt                                                                              >  2:963607/1‑100 (MQ=255)
                     cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGACGGATAACGCGCCAGATCCGGCTTACAt                                                                              >  1:414056/1‑100 (MQ=255)
                      ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTatccggctaaactt                                                                             >  1:1086149‑M2/1‑86 (MQ=255)
                      ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                             <  1:601666/100‑1 (MQ=255)
                       cttcgCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaactta                                                                            <  1:1874709‑M1/98‑26 (MQ=255)
                       cATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtct                                                                            >  2:2022468/1‑100 (MQ=255)
                         tCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaacttaag                                                                          >  2:1874719‑M1/1‑73 (MQ=255)
                          cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGTCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                         <  1:1711662/100‑1 (MQ=255)
                          cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                         <  2:1666237/100‑1 (MQ=255)
                           gCCGGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                         <  1:29701/99‑1 (MQ=255)
                             cAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcat                                                                      <  2:1270540/100‑1 (MQ=255)
                              aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                                     >  2:2281790/1‑100 (MQ=255)
                              aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                                     >  1:62492/1‑100 (MQ=255)
                               ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGACGGGTAACGCGCCAGATCCGGCTTACATCTCTGcatca                                                                    >  1:1807026/1‑100 (MQ=255)
                                   gCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGCGTAAGATTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                 >  1:1593165/1‑99 (MQ=255)
                                     ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                              <  2:1897315/100‑1 (MQ=255)
                                      gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATg                                                             <  2:2104044/100‑1 (MQ=255)
                                       tACAACACGCCCAGCAAGTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGc                                                            >  1:355348/1‑100 (MQ=255)
                                         caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATaacgcgccagatccggctaaacttacacgccgtaccccatcat                                                          >  2:2455402‑M1/1‑57 (MQ=255)
                                          aacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                         <  2:47495/100‑1 (MQ=255)
                                            ttccgatctcAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAcc                                                       <  2:190422/91‑1 (MQ=255)
                                            cacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGAATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAcc                                                       >  2:1907451/1‑100 (MQ=255)
                                              cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                                     >  2:1625551/1‑100 (MQ=255)
                                                cccAGCAATTGCTGCAGATGATGGGGCACGGCGCGTAAATTTAGCCGGATAACGCGCCGGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                   >  1:821779/1‑100 (MQ=255)
                                                 ccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGt                                                  >  1:18712/1‑100 (MQ=255)
                                                   aGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTa                                                <  2:229282/100‑1 (MQ=255)
                                                     cAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAccagatcggaa                                              >  1:190421/1‑91 (MQ=255)
                                                     cAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACg                                              <  2:198956/100‑1 (MQ=255)
                                                       aTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGcc                                            <  1:2022456/100‑1 (MQ=255)
                                                            tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCt                                        >  1:1132070/1‑99 (MQ=255)
                                                            tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                       <  2:1604689/100‑1 (MQ=255)
                                                            tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                       >  1:106808/1‑100 (MQ=255)
                                                             gAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGt                                      >  1:1610968/1‑100 (MQ=255)
                                                                gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                   <  2:55396/100‑1 (MQ=255)
                                                                gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                   <  1:1710818/100‑1 (MQ=255)
                                                                 atgatgGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttg                                  >  2:2455402‑M2/1‑43 (MQ=255)
                                                                  tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                 >  1:1930644/1‑100 (MQ=255)
                                                                  tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                 <  2:2576816/100‑1 (MQ=255)
                                                                      ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                             <  2:68649/100‑1 (MQ=255)
                                                                      ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                             >  2:1232197/1‑100 (MQ=255)
                                                                       gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                            >  2:1446784/1‑100 (MQ=255)
                                                                       gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                            >  2:1287931/1‑100 (MQ=255)
                                                                       gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCa                              >  1:417298/1‑98 (MQ=255)
                                                                        ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaacc                           >  1:1236681/1‑98 (MQ=255)
                                                                        ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:680802/100‑1 (MQ=255)
                                                                        ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:69849/100‑1 (MQ=255)
                                                                        ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  2:396998/100‑1 (MQ=255)
                                                                         ttactgggtgtAAGTTTAGGCGGATAACGCGCCAGATCCGGCTTACATCTCTTCATCATTCAATGCTGACTTGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:851572/92‑1 (MQ=255)
                                                                         gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:1290039/99‑1 (MQ=255)
                                                                         gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACt                          <  2:1809597/100‑1 (MQ=255)
                                                                         gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGATCACCCGCGTTACGCCATCTGTTTCTATCaaa                            <  1:142279/98‑1 (MQ=255)
                                                                             ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                      <  2:1519716/100‑1 (MQ=255)
                                                                             ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                      <  2:1169781/100‑1 (MQ=255)
                                                                              gCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAcc                     <  1:233037/100‑1 (MQ=255)
                                                                                  gtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAc                 >  1:501198/1‑100 (MQ=255)
                                                                                     aGTTTAGCCGGATaacgcgccagatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggccatggg              >  1:599866‑M1/1‑13 (MQ=255)
                                                                                      gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc             <  1:226284/100‑1 (MQ=255)
                                                                                      gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc             <  2:745170/100‑1 (MQ=255)
                                                                                         tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg          >  2:1476061/1‑100 (MQ=255)
                                                                                          aGCCGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttccgcaattgctgggcgtgttgtaccgcatcctggcgatgggccacg         >  2:1074813‑M1/1‑8 (MQ=255)
                                                                                          aGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGa         <  1:959991/100‑1 (MQ=255)
                                                                                           gCCGGATctggcgcgttatccggctaaacttacacgccgtaccccctcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacg         >  2:459338‑M1/1‑7 (MQ=255)
                                                                                           gCCGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagccattgctgggcgtgttgtaccgcatcctggcgatgggccacg         <  1:1414123‑M1/99‑93 (MQ=255)
                                                                                           gCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgc        <  2:2566739‑M2/100‑84 (MQ=255)
                                                                                           gCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgc        <  1:2544078‑M2/100‑84 (MQ=255)
                                                                                           gCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatccaggcgatgggccacgc        <  1:2408441‑M2/100‑84 (MQ=255)
                                                                                            ccGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaaa       <  2:1400915/100‑1 (MQ=255)
                                                                                            ccGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCCCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg          >  1:1301183/1‑97 (MQ=255)
                                                                                             cGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAAc      >  1:402901/1‑100 (MQ=255)
                                                                                              ggATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCGCCGGCAAGAAACg     >  2:1094966/1‑100 (MQ=255)
                                                                                               gATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgag    <  2:2093300‑M1/100‑98 (MQ=255)
                                                                                               gATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgag    <  1:1063664‑M1/100‑98 (MQ=255)
                                                                                                 tctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgagtt  <  2:718919‑M1/100‑100 (MQ=255)
                                                                                                 tAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc  <  1:527758/100‑1 (MQ=255)
                                                                                                 tAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc  >  2:1176377/1‑100 (MQ=255)
                                                                                                 tAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc  <  2:452509/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
TGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTC  >  NC_000913/3555705‑3555901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.