New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3635910 =72 (0.790)17 (0.210) 10/154 NT 20.3% intergenic (+17/+298) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 3635946 = 71 (0.900)intergenic (+53/+262) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase

AAAAAACAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3636020‑3635910
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAG  >  NC_000913/3635946‑3636044
                                                                                                                                                                                                                  
AAAAAACAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCA                                                                                                                >  2:1149708/1‑100
AAAAAACAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCA                                                                                                                <  2:1755459/100‑1
 AAAAACAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAA                                                                                                               >  2:1331199/1‑100
   AAACAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACG                                                                                                             >  2:1524768/1‑100
      CAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTG                                                                                                          >  1:115232/1‑100
       AGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGG                                                                                                         <  2:417689/100‑1
       AGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGG                                                                                                         <  2:2239433/100‑1
        GTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                                        <  2:401938/100‑1
        GTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                                                        >  1:1729545/1‑100
         TAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTT                                                                                                       <  2:2190038/100‑1
          AACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTT                                                                                                      <  2:1628971/100‑1
          AACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTT                                                                                                      <  2:159493/100‑1
           ACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTT                                                                                                     <  2:1957450/100‑1
           ACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTT                                                                                                     >  1:502519/1‑100
                                                                 ATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAA                                               >  2:1868852/1‑100
                                                                     CTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCTTCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAG                                           >  1:2450475/1‑100
                                                                       AAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCA                                         >  1:2155576/1‑100
                                                                        AGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAA                                        >  2:1490514/1‑100
                                                                           AAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGT                                     >  2:2067345/1‑100
                                                                            AAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTT                                    >  1:1256529/1‑100
                                                                            AAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTT                                    >  2:1330355/1‑100
                                                                             AACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTA                                   >  2:1711470/1‑100
                                                                             AACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGT                                     >  2:2069607/1‑98
                                                                             AACCAGCGTTACGCAAATGGTCAACGCTGGTTTATCTTAGGCATCATGAAATAACGCAGCATTAATGCATCGTGGTTAAGTATAAAAAACAGCAAAGTTA                                   >  1:1553813/1‑100
                                                                              ACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAC                                  >  1:11270/1‑100
                                                                              ACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAC                                  >  1:2515568/1‑100
                                                                              ACCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAC                                  >  2:1365212/1‑100
                                                                               CCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACT                                 >  2:421597/1‑100
                                                                               CCAGCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACT                                 >  2:1538940/1‑100
                                                                               CCAGCGTTACGCAAATGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAACACAGCAAAGTTACTG                                >  1:104979/1‑100
                                                                                  GCGTTACGCAAATGGTCAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTT                              >  1:825966/1‑100
                                                                                                      GCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATT          >  1:2552492/1‑100
                                                                                                       CTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTT         >  2:941333/1‑100
                                                                                                       CTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTT         <  1:183556/100‑1
                                                                                                       CTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGATACTGTTTTTTTCAACCTGTTCATATTT         >  1:931765/1‑100
                                                                                                         GGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCA       >  2:2028594/1‑100
                                                                                                         GGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCA       <  1:1365204/100‑1
                                                                                                         GGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCA       <  1:451627/100‑1
                                                                                                         GGTTTTTCTTAGGCATCATGAAATAACGCAGCACTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTGACTGTTTTTTTCAACCTGTTCATATTTCA       >  1:1557102/1‑100
                                                                                                          GTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAATACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCAT      <  1:1894756/100‑1
                                                                                                          GTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCAT      >  2:1065872/1‑100
                                                                                                          GTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCAT      >  2:1066296/1‑100
                                                                                                          GTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTC        >  2:1777528/1‑98
                                                                                                           TTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGCTTACGTATAAAACACATCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATA     <  1:600652/100‑1
                                                                                                              TTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAG  <  2:2101324/100‑1
                                                                                                              TTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAG  <  1:1538931/100‑1
                                                                                                              TTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTCTCAACCTGTTCATATTTCATAAAG  <  2:838030/100‑1
                                                                                                                                                                                                                  
AAAAAACAGTAACTTTGCTGTTTTTTATACTTAACCACTATGCATTAATGCTGCGTTATTTCATGATGCCTAAGAAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3636020‑3635910
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAG  >  NC_000913/3635946‑3636044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.