New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 363592172 (0.790)17 (0.210) 9/154 NT 20.3% intergenic (+28/+287) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 = 3635933 71 (0.900)intergenic (+40/+275) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase

GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3635811‑3635921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccagcgttACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC  <  NC_000913/3635933‑3635838
                                                                                                                                                                                                               
GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATA                                                                                                             <  2:588934/100‑1
 AGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAA                                                                                                            <  2:613355/100‑1
  GTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAA                                                                                                           >  1:1791837/1‑100
   TTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAA                                                                                                          <  2:1365491/100‑1
    TCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAAC                                                                                                         >  2:231251/1‑100
     CTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACC                                                                                                        >  1:2441614/1‑100
     CTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAAC                                                                                                         >  1:126675/1‑99
     CTGGTCGGTGTGGGAGCGGTATGTTTGACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTGCCGGATAAAACC                                                                                                        <  1:747495/100‑1
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                      <  2:582386/100‑1
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                      >  2:2243670/1‑100
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                      <  2:357868/100‑1
       GGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAG                                                                                                      >  2:1018869/1‑100
           GGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT                                                                                                  >  2:2333215/1‑100
            GTTTGGGAGCGGTATGCTTTACGCTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAActcaagcg                                                                                                    >  1:1445838/1‑89
                    GCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATG                                                                                         <  2:416371/100‑1
                             TTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCT                                                                                <  2:2183116/100‑1
                               TACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGG                                                                              <  1:2333201/100‑1
                               TACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGG                                                                              <  2:1250831/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                             <  1:2310422/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                             <  2:742746/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                             <  2:1278840/100‑1
                                ACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                             <  1:2119204/100‑1
                                 CGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTT                                                                            <  2:1177412/100‑1
                                 CGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTT                                                                            <  1:371620/100‑1
                                 CGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTT                                                                            <  1:111534/100‑1
                                  GTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTT                                                                           <  1:1617219/100‑1
                                  GTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGT                                                                             <  1:2037423/98‑1
                                    TGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTT                                                                           <  2:2326421/98‑1
                                      TTCTCAATCGTTTCAATATTAGAAGCGAGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATC                                                                       <  1:1266090/100‑1
                                       TCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCC                                                                      <  2:1316380/100‑1
                                        CTCAATCGTTTTAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCG                                                                     <  1:1056843/100‑1
                                                                                                    AAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAAC         >  2:979818/1‑100
                                                                                                    AAACCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAAC         <  2:1787450/100‑1
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA      >  2:1791846/1‑100
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA      <  2:1214386/100‑1
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA      <  1:1326024/100‑1
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA      <  1:1325985/100‑1
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA      <  1:1149704/100‑1
                                                                                                       CCAGCGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTA      >  1:1077216/1‑100
                                                                                                           CGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC  <  1:514070/100‑1
                                                                                                           CGTTACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC  <  1:2494042/100‑1
                                                                                                                                                                                                               
GAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3635811‑3635921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccagcgttACGCAAATGGTCAACGCTGGTTTTATCCGGTACGTTGCAATTATTTTTTAGCAGAACCCGCTTCTAATATTGAAACGATTGAGAACAACGTAAAGC  <  NC_000913/3635933‑3635838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.