New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 363592172 (0.790)17 (0.210) 9/154 NT 20.3% intergenic (+28/+287) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 = 3635933 71 (0.900)intergenic (+40/+275) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase

Only 100 of 163 total aligned reads displayed.

GGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTT  >  NC_000913/3635822‑3636020
                                                                                                   |                                                                                                   
ggTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTT                                                                                                     >  2:2333215‑M1/1‑100 (MQ=255)
 gTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCACCGTACCGGATGAAACCGGCGTTg                                                                                                    <  2:1702841/100‑1 (MQ=255)
 gTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTg                                                                                                    <  2:2324165/100‑1 (MQ=255)
 gTTTGGGAGCAGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTg                                                                                                    <  1:2119924/100‑1 (MQ=255)
  tttGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGa                                                                                                   <  2:552009/100‑1 (MQ=255)
       gAGCGGTATGTTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCAtt                                                                                              <  2:669794/100‑1 (MQ=255)
         gCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGACGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTg                                                                                            <  1:2557460/100‑1 (MQ=255)
         gCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTg                                                                                            <  2:830161/100‑1 (MQ=255)
         gCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTg                                                                                            <  1:1946727/100‑1 (MQ=255)
                gCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacg                                                                                     <  1:514070‑M2/100‑5 (MQ=255)
                gCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacg                                                                                     <  1:2494042‑M2/100‑5 (MQ=255)
                 aacagtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGc                                                                                    >  1:825966‑M1/72‑100 (MQ=255)
                    tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctgg                                                                                 <  1:2333201‑M1/100‑21 (MQ=255)
                    tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctgg                                                                                 <  2:1214386‑M2/100‑9 (MQ=255)
                    tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctgg                                                                                 >  2:1791846‑M2/1‑92 (MQ=255)
                    tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctgg                                                                                 >  1:1077216‑M2/1‑92 (MQ=255)
                    tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctgg                                                                                 <  1:1325985‑M2/100‑9 (MQ=255)
                    agtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTgg                                                                                 >  2:421597‑M1/69‑100 (MQ=255)
                     gtaactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGt                                                                                >  2:1365212‑M1/68‑100 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggt                                                                                <  1:2310422‑M1/100‑22 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggt                                                                                <  1:2119204‑M1/100‑22 (MQ=255)
                     aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggt                                                                                <  2:1278840‑M1/100‑22 (MQ=255)
                      taactttgctgttttttatacttaaccacgatgcattaatgctgcgttatttcatgatgcctaagaTAAACCAGCGTTGACCATTTGCGTAACGCTGGtt                                                                               >  1:1553813‑M1/67‑100 (MQ=255)
                      cGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggtt                                                                               <  1:371620‑M1/100‑23 (MQ=255)
                      cGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggtt                                                                               <  1:111534‑M1/100‑23 (MQ=255)
                       gttgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTaacgctggttt                                                                              <  2:1787450‑M2/100‑12 (MQ=255)
                       aactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGttt                                                                              >  1:1256529‑M1/66‑100 (MQ=255)
                       aactttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGttt                                                                              >  2:1330355‑M1/66‑100 (MQ=255)
                        actttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGtttt                                                                             >  2:2067345‑M1/65‑100 (MQ=255)
                        actttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGtt                                                                               >  2:2069607‑M1/65‑98 (MQ=255)
                          gttCTCAATCGTTTCAATAGTAGAAGCGGGTTCTTCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGAGCATTTGCGTAACGCTGGTTTTTc                                                                           <  1:1893617/100‑1 (MQ=255)
                           ttgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                          >  2:1490514‑M1/62‑100 (MQ=255)
                            tgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         >  1:2155576‑M1/61‑100 (MQ=255)
                            tctcAATCGTTTCACTATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAAACAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                         >  1:1159139/1‑100 (MQ=255)
                            tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggttttatcc                                                                         <  2:1316380‑M1/100‑29 (MQ=255)
                             ctcAATCGTTTTAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTacgcaaatggtcaacgctggttttatccg                                                                        <  1:1056843‑M1/100‑30 (MQ=255)
                              ctgttttttatacttaaccactatgcattaatgctgcgttatttcatgaagcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAg                                                                       >  1:2450475‑M1/59‑100 (MQ=255)
                               cAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAgg                                                                      >  2:217677/1‑100 (MQ=255)
                                aaTCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGc                                                                     <  2:39587/100‑1 (MQ=255)
                                 aTCGTTTCAATATTAGAAGCGGGTTCTCCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGca                                                                    <  1:384521/100‑1 (MQ=255)
                                     tttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatcat                                                                <  1:212069/100‑1 (MQ=255)
                                      ttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATg                                                               >  2:1863888/1‑100 (MQ=255)
                                        cAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaa                                                             >  1:762887/1‑100 (MQ=255)
                                        cAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaa                                                             >  2:2321635/1‑100 (MQ=255)
                                         aaTATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCTGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaaa                                                            <  1:1661572/100‑1 (MQ=255)
                                         aaTATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaaa                                                            >  2:1000545/1‑100 (MQ=255)
                                         aaTATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaaa                                                            >  1:2182498/1‑100 (MQ=255)
                                          atatTAGAAGCGGGTTCTGCTAAAAAATAATTGCTACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGTCATAATGAAAt                                                           <  1:1360162/100‑1 (MQ=255)
                                          atatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaa                                                             <  1:2387587/98‑1 (MQ=255)
                                           tatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATa                                                          >  1:2034482/1‑100 (MQ=255)
                                              tAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACg                                                       <  1:2321621/100‑1 (MQ=255)
                                                gAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                     >  2:2450540/1‑100 (MQ=255)
                                                         tCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATg                                            <  1:1048374/100‑1 (MQ=255)
                                                         tCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATg                                            <  1:833606/100‑1 (MQ=255)
                                                           tGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCa                                          >  2:1840316/1‑100 (MQ=255)
                                                            gCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCAt                                         >  2:85864/1‑100 (MQ=255)
                                                            gCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCAt                                         >  1:34828/1‑100 (MQ=255)
                                                             cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATa                                        >  2:1216149/1‑100 (MQ=255)
                                                             cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATa                                        >  2:1581704/1‑100 (MQ=255)
                                                              tAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAg                                       >  2:1729554/1‑100 (MQ=255)
                                                              tAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAg                                       >  2:2504008/1‑100 (MQ=255)
                                                               aaaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGt                                      >  1:1732909/1‑100 (MQ=255)
                                                                aaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTg                                     <  1:2450523/100‑1 (MQ=255)
                                                                 aaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTgg                                    >  1:310448/1‑100 (MQ=255)
                                                                    ataatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTa                                 <  1:1244605/100‑1 (MQ=255)
                                                                       atTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCCTGAAATAACGCACCATTAATGCATAGTGGCTaa                                >  1:2052714/1‑98 (MQ=255)
                                                                        ttGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGta                             >  1:527893/1‑100 (MQ=255)
                                                                         tGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGtat                            >  2:371718/1‑100 (MQ=255)
                                                                                tACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATACAAAAc                     <  1:1023676/100‑1 (MQ=255)
                                                                                   cGGATAAAACCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattaaaacgattgag                  <  1:1056843‑M2/100‑72 (MQ=255)
                                                                                    ggATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCa                 >  2:305743/1‑100 (MQ=255)
                                                                                    ggATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCa                 >  2:621120/1‑100 (MQ=255)
                                                                                     gATAAAACCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaactcgcttctaatattgaaacgattgagaa                <  1:1266090‑M2/100‑74 (MQ=255)
                                                                                     gATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCaa                >  2:1177063/1‑100 (MQ=255)
                                                                                      aTAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCaaa               >  1:1500926/1‑100 (MQ=255)
                                                                                        AAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGt             <  2:1957450‑M1/100‑1 (MQ=255)
                                                                                        AAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGt             >  1:502519‑M1/1‑100 (MQ=255)
                                                                                         aaaCCAGCGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaac            >  2:979818‑M1/1‑11 (MQ=255)
                                                                                         aaaCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaac            <  1:1617219‑M2/100‑78 (MQ=255)
                                                                                         aaaCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaaca              <  2:2326421‑M2/98‑76 (MQ=255)
                                                                                         AAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGtt            <  2:159493‑M1/100‑1 (MQ=255)
                                                                                          aaCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacg           <  2:1177412‑M2/100‑79 (MQ=255)
                                                                                          aaCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacg           <  1:111534‑M2/100‑79 (MQ=255)
                                                                                          AACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTa           <  2:2190038‑M1/100‑1 (MQ=255)
                                                                                           aCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgt          <  2:742746‑M2/100‑80 (MQ=255)
                                                                                           aCCAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaac            <  1:2037423‑M2/98‑78 (MQ=255)
                                                                                           ACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc          <  2:401938‑M1/100‑1 (MQ=255)
                                                                                            ccAGCGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgta         <  1:1149704‑M1/100‑93 (MQ=255)
                                                                                            ccAGCGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgta         <  1:1326024‑M1/100‑93 (MQ=255)
                                                                                            ccAGCGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgta         >  2:1791846‑M1/1‑8 (MQ=255)
                                                                                            ccAGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgta         <  2:1250831‑M2/100‑81 (MQ=255)
                                                                                            CCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACt         <  2:417689‑M1/100‑1 (MQ=255)
                                                                                            CCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACt         <  2:2239433‑M1/100‑1 (MQ=255)
                                                                                             CAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTg        >  1:115232‑M1/1‑100 (MQ=255)
                                                                                              aGCGTTGACCATTTGCGTaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaa       <  2:2183116‑M2/100‑83 (MQ=255)
                                                                                                cGTTacgcaaatggtcaacgctggttttatccggtacgttgcaattattttttagcagaacccgcttctaatattgaaacgattgagaacaacgtaaagc     <  1:2494042‑M1/100‑97 (MQ=255)
                                                                                                CGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGttt     >  2:1524768‑M1/1‑100 (MQ=255)
                                                                                                  TTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGttttt   >  2:1331199‑M1/1‑100 (MQ=255)
                                                                                                   TGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt  <  2:1755459‑M1/100‑1 (MQ=255)
                                                                                                   TGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt  >  2:1149708‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTT  >  NC_000913/3635822‑3636020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.