| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4124709 | 79 (0.860) | 14 (0.170) | 9/164 | NT | 15.1% | coding (2102/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | = 4124729 | 85 (1.010) | coding (2082/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
GAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4124605‑4124709‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgca‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATGT < NC_000913/4124729‑4124631 GAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTG > 1:1981103/1‑100GAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTG < 1:2020167/100‑1GAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATGGTATTCATGATCGCCAGCGTACCGTTAATGATGTG > 1:518517/1‑100 tccgatctACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTT < 1:448787/92‑1 GCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTT > 2:425117/1‑100 GCGGTTTAACCCCCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCTGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTT > 1:1652466/1‑100 GGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTCACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGC > 1:71669/1‑100 GTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA > 2:976646/1‑100 GTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA > 1:822033/1‑100 GTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA > 2:1371240/1‑100 ACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATCGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTagatcg > 2:448789/1‑92 CGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCG > 2:972348/1‑100 ATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACCCTTCCCGCGTGCGCT < 1:570931/100‑1 CCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACCCTTCCCGCGTGCGCTTG < 2:589983/100‑1 AGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACA < 2:1214463/100‑1 CACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACA < 2:1752687/100‑1 ACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACAT < 2:2148396/100‑1 ACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACAT < 1:972345/100‑1 ACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACAT < 1:807993/100‑1 ACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACAT < 1:772549/100‑1 caCATTTCACCTTACGGTAATCCGTTATTGTAATGCTGACCGGCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATC < 1:1820491/98‑1 CATTTCACCTTACTGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCAT < 2:346749/100‑1 CATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCAT < 2:730123/100‑1 CATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCAT < 1:1588182/100‑1 CACCTTACGGTAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACG < 2:478547/100‑1 TGTTGCA‑‑‑GCACCCTTCCTGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCT > 1:1939361/1‑100 TTGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGG < 2:1424958/100‑1 TGCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGG > 1:1290325/1‑99 GCA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGAT > 2:868805/1‑100 CA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATG < 2:1636045/100‑1 CA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATG > 1:2488101/1‑100 CA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATG > 1:2482123/1‑100 CA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATG < 2:2572980/100‑1 CA‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATG > 1:1456111/1‑100 A‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATGT > 2:2026534/1‑100 A‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATGT < 1:227048/100‑1 GAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4124605‑4124709‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgca‑‑‑GCACCCTTCCCGCGTGCGCTTGCAACACATCATTAACGGTACGCTGGCGCTCATCAATACAATACCGGATTCCCGTAAGGTGAAATGGGTGCTGGATGT < NC_000913/4124729‑4124631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |