| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4153658 | NA (NA) | 10 (0.120) | 7/164 | NT | NA | noncoding (312/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 4153688 | NA (NA) | noncoding (342/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
CCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4153561‑4153658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAA < NC_000913/4153688‑4153583 CCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGC > 1:1466215/1‑100CCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGC > 1:1146808/1‑100 GCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCG < 2:2252745/100‑1 atcgggtcAGTCAGTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAT < 1:2323243/80‑1 aggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 1:755419/97‑1 CACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 2:1639763/100‑1 ggTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGCG < 2:27303/98‑1 ACTGTAGTTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGCG < 2:46007/100‑1 gTGTAGGTCGGATAAGATGCGCAAGTAGCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGCATAAGGCGCTCGCGCCGCATCCGGCac < 2:551025/99‑3 CTGTAGGTCGGCTAAGATGCGCAAGCATCGCATCCGACATTATTGCCGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGCGC < 2:1393332/100‑1 gaAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGCGCTG < 1:1237629/98‑1 GGATAAGATGCGCAAGCATAGCATCCGACATTAGTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAA < 2:1531572/100‑1 GATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAA < 1:725734/100‑1 CCGGATAAGGCACTCGCGCCGCATCCGGCGCTGTTGCCAAACTCCAGTGCCACAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACA > 1:2355354/1‑96 ctGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAACGCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGTCCTACAGTGAC < 1:2237837/98‑1 CGGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCATACTCCAGTGCCGCAATAATTTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGAC < 1:1412610/100‑1 CGGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGAC < 2:223059/100‑1 GGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACT < 2:1137705/100‑1 TAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAA > 2:923396/1‑100 CCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4153561‑4153658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCGCTGTTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAA < NC_000913/4153688‑4153583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |