New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4153658NA (NA)10 (0.120) 7/164 NT NA noncoding (312/346 nt) REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 4153688 NA (NA)noncoding (342/346 nt) REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 142 total aligned reads displayed.

CACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGA  >  NC_000913/4153589‑4153786
                                                                                                   |                                                                                                  
cACTGTAGGTCGGGTAAAATGCGCAAGCGTCGCACCCCACATGTTTGCGGCCCTTGAGTTTGGCAACAGCGCCGGATAAGGCGCTCGCGCCGCATCCGGc                                                                                                    <  1:2454267/100‑1 (MQ=16)
 aCTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGcc                                                                                                   <  1:336520/100‑1 (MQ=38)
 aCTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGcc                                                                                                   <  1:1137701/100‑1 (MQ=40)
 aCTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGcc                                                                                                   <  2:800794/100‑1 (MQ=40)
       ggTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGtt                                                                                             >  1:111651/1‑100 (MQ=11)
       ggTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGtt                                                                                             >  2:1944052/1‑100 (MQ=40)
        gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGttt                                                                                            <  1:424284/100‑1 (MQ=40)
        gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGttt                                                                                            <  1:504785/100‑1 (MQ=40)
           ggATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTaa                                                                                         >  2:1419110/1‑100 (MQ=255)
            gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAAt                                                                                        <  2:2044412/100‑1 (MQ=255)
            gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAAt                                                                                        <  1:1909933/100‑1 (MQ=255)
            gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAAt                                                                                        <  2:489200/100‑1 (MQ=255)
                aGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCa                                                                                    >  2:351410/1‑100 (MQ=255)
                aGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCa                                                                                    >  2:2354280/1‑100 (MQ=255)
                 gATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAg                                                                                   <  2:362260/100‑1 (MQ=255)
                   tGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCa                                                                                 >  1:125653/1‑100 (MQ=255)
                    gcgcAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCaa                                                                                >  2:1692897/1‑100 (MQ=255)
                     cgcAAGCATCGCATCCGACATTATTGCGGCACTGGACTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGACAGCaaa                                                                               >  2:1823322/1‑100 (MQ=255)
                       cAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCaaaaa                                                                             >  2:2252294/1‑100 (MQ=255)
                       cAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCaaa                                                                               >  1:436816/1‑98 (MQ=255)
                         aGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATg                                                                           <  2:1440830/100‑1 (MQ=255)
                         aGCATCGCATCCGACATTATTGCGGCACTGGAGTGTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATg                                                                           <  1:1564631/100‑1 (MQ=255)
                          gcatcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCCAAAATgg                                                                          >  1:270972/1‑100 (MQ=255)
                          gcatcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATgg                                                                          >  2:1020148/1‑100 (MQ=255)
                            atcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGt                                                                         >  1:643913/1‑99 (MQ=255)
                            atcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTg                                                                        >  2:1416817/1‑100 (MQ=255)
                            atcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCATTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTg                                                                        <  2:186313/100‑1 (MQ=255)
                            agcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTg                                                                        <  1:376307/98‑1 (MQ=255)
                               gcatcCGACATTATTGCGGCACTGGGGTTTGGCAACAGCCCCGGATGCGTCGCGAGCGCCTTGTCCGGAATCCGTTTTACTGCCAGCACAAATGGTGaa                                                                      >  1:1089945/1‑99 (MQ=17)
                                catcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAAtt                                                                    <  1:2090000/100‑1 (MQ=255)
                                 atcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAAtt                                                                    <  1:527367/99‑1 (MQ=255)
                                    cGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCt                                                                >  2:1634685/1‑100 (MQ=255)
                                    cGACATTATTGCGGCACTGGAGTTTGGCAACACCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCt                                                                >  2:2463016/1‑100 (MQ=255)
                                     gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTg                                                               >  1:296278/1‑100 (MQ=255)
                                       cATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTggg                                                             <  2:2222783/100‑1 (MQ=255)
                                        attattGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGt                                                            <  1:1032319/100‑1 (MQ=255)
                                            ttGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATc                                                        <  2:1098046/100‑1 (MQ=255)
                                             tGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATc                                                        >  2:1865021/1‑99 (MQ=255)
                                               cGGCATTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAg                                                      <  1:1694111/99‑1 (MQ=255)
                                                ggCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGtt                                                    >  2:836830/1‑100 (MQ=255)
                                                    cTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgcg                                                <  2:842847/100‑1 (MQ=255)
                                                     tGGAGTTTGGCAACAGTGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCgg                                               <  1:738980/100‑1 (MQ=255)
                                                     tGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAACGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCgg                                               <  1:280395/100‑1 (MQ=255)
                                                       gAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGt                                             >  2:913724/1‑100 (MQ=255)
                                                         ntttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTgg                                           >  2:837291/2‑100 (MQ=255)
                                                         gTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTgg                                           <  1:2165339/100‑1 (MQ=255)
                                                          tttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatc                                          <  1:725734‑M2/100‑59 (MQ=255)
                                                           ttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCgctgttgccaaactccagtgccgcactaatgtcggatgctatgcttgcgcatcttatcc                                         <  2:1531572‑M2/100‑60 (MQ=255)
                                                           ttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGc                                         <  1:1420092/100‑1 (MQ=255)
                                                             ggCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCtt                                       <  2:1770380/100‑1 (MQ=255)
                                                             ggCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCAGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCtt                                       >  2:1822916/1‑100 (MQ=255)
                                                              gCAACAGCGCTGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTg                                      <  2:757205/100‑1 (MQ=255)
                                                              gCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTg                                      >  2:1702667/1‑100 (MQ=255)
                                                              gCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGCTTTAATGCCAGCAAAACTGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCtt                                       >  1:2361057/1‑99 (MQ=255)
                                                               cAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGa                                     >  1:1579016/1‑100 (MQ=255)
                                                                 aCAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATa                                   >  2:2239881/1‑100 (MQ=255)
                                                                   taggcCGGATAAGGCGCGAGCGCTTGATCCGGCCTACGTTATAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGAt                                    <  1:1660821/94‑1 (MQ=255)
                                                                   aGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATaaa                                 >  2:1391089/1‑100 (MQ=255)
                                                                    gtgccgGATGCGGCGCGAGCGCCTTATGCGGCactgttgccaaactccagtgccgcaataatgtcggatgcgctacttgcgcatcttatccgacctacac                                <  2:551025‑M2/98‑69 (MQ=255)
                                                                    gcgcCGGATGCGGCGCGAGCGCCTTATCCGGCgctgttgccaaactccagtgcggcaataatgtcggatgcgatgcttgcgcatcttagccgacctacag                                <  2:1393332‑M2/100‑69 (MQ=255)
                                                                    gcgcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                                <  1:1008961/100‑1 (MQ=255)
                                                                     cgcCGGATGCGGCGCGAGCGCCTTATCCGGCgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgacctacacc                               <  2:27303‑M2/100‑70 (MQ=255)
                                                                     cgcCGGATGCGGCGCGAGCGCCTTATCCGGCgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgaactacagt                               <  2:46007‑M2/100‑70 (MQ=255)
                                                                      gcCGGATGCGGCGCGAGCGCCTTATCCGGCgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgacctacagtg                              <  2:1639763‑M2/100‑71 (MQ=255)
                                                                      gcCGGATGCGGCGCGAGCGCCTTATCCGGCactgttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacct                              <  1:755419‑M2/100‑71 (MQ=255)
                                                                      gcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAcc                               <  1:358403/99‑1 (MQ=255)
                                                                      gcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCg                              <  2:1295135/100‑1 (MQ=255)
                                                                      gcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCg                              <  1:910451/100‑1 (MQ=255)
                                                                      gcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCg                              >  1:142433/1‑100 (MQ=255)
                                                                      gcCGGATAAGGCGCTCGCGCCGCATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCg                              >  1:228869/1‑100 (MQ=37)
                                                                       ccGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                             >  2:785585/1‑100 (MQ=255)
                                                                        cGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg                            <  1:1086444/100‑1 (MQ=255)
                                                                        cGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg                            <  2:625097/100‑1 (MQ=255)
                                                                         gggtacggcgCTCGCGCCGCATCCGGCCTACGTTTTAATGCCAGCAAAACTGGTGAATTACCTGGGTTATGAGCTAGCGGGTGGGCTTGATAAACCgtgt                           >  1:618325/6‑100 (MQ=255)
                                                                         ggATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg                            >  2:1544479/1‑99 (MQ=255)
                                                                            tGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGTCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTc                        <  2:241824/100‑1 (MQ=255)
                                                                            tGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTc                        >  1:920475/1‑100 (MQ=255)
                                                                               ggcgCGAGTGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg                     >  1:1049082/1‑100 (MQ=255)
                                                                               ggcgCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg                     >  1:1286330/1‑100 (MQ=255)
                                                                               ggcgCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg                     >  1:2080771/1‑100 (MQ=255)
                                                                                  gcgAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata                  <  1:1536863/100‑1 (MQ=255)
                                                                                  gcgAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata                  >  2:2287285/1‑100 (MQ=255)
                                                                                   cgAGCGCCTTATCCGGCgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgacctacagtgactcaaacgatgc                 <  2:2252745‑M2/100‑84 (MQ=255)
                                                                                   cgAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGttagatcggaa                 >  2:357526/1‑91 (MQ=255)
                                                                                    gAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCTAGATAtt                <  1:197447/100‑1 (MQ=255)
                                                                                    gAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATAtt                <  1:1737318/100‑1 (MQ=255)
                                                                                    gAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATAtt                <  1:341568/100‑1 (MQ=255)
                                                                                      gcgcCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtca              <  1:43248/100‑1 (MQ=255)
                                                                                       cgcCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcat             <  2:111652/100‑1 (MQ=255)
                                                                                       cgcCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcat             <  2:2065843/100‑1 (MQ=255)
                                                                                         ccTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcatca           >  2:1277893/1‑100 (MQ=255)
                                                                                         ccTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcatca           <  2:46424/100‑1 (MQ=255)
                                                                                         ccTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcatca           >  2:543517/1‑100 (MQ=255)
                                                                                            tATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGt        >  2:209653/1‑100 (MQ=255)
                                                                                             aTCCGGCgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgacctacactgactgacccgat                   <  1:2323243‑M2/88‑82 (MQ=255)
                                                                                               ccGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTtga     <  2:2558344/100‑1 (MQ=255)
                                                                                                cGGCCTACGTTTTAATGCCAGCAAAAATGGTGAACTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTtgat    <  1:1475761/100‑1 (MQ=255)
                                                                                                 ggCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTtgatg   <  2:534916/100‑1 (MQ=255)
                                                                                                  gcgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgacctacagtgactcaaacgatgcccaaccgtaggccgg  >  1:1466215‑M2/1‑2 (MQ=255)
                                                                                                  gcgctgttgccaaactccagtgccgcaataatgtcggatgcgatgcttgcgcatcttatccgacctacagtgactcaaacgatgcccaaccgtaggccgg  >  1:1146808‑M2/1‑2 (MQ=255)
                                                                                                   |                                                                                                  
CACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGA  >  NC_000913/4153589‑4153786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.