| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4628749 | 95 (1.040) | 12 (0.140) | 8/164 | NT | 12.2% | noncoding (55/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628768 | 86 (1.020) | noncoding (74/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628645‑4628749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTCG < NC_000913/4628768‑4628670 AAAAACCTGCACGGGTGACCCGCCACGAGATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTAACGCCGCATACGGCACGCGGTGCTGAATGC > 1:808166/1‑100AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCATGCCGCATCCGGCATTCGGTGCTCAATGC > 2:1792355/1‑100AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGC > 2:1080484/1‑100 AAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCC > 2:545064/1‑100 AAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCC < 1:1116740/100‑1 AAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCT < 2:1720484/100‑1 ACCTGCACGGGTGAACCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTG < 1:316054/99‑1 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT > 1:2090082/1‑100 CCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGAGACGCGGTAAG > 2:1066362/1‑100 CACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGAGACGCGGTAAGCGTCG < 1:1066358/100‑1 AATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCGGTAAGCGTCGCATC < 1:1345421/99‑1 AATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCA < 1:1708060/100‑1 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 2:1916542/100‑1 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 1:1687286/100‑1 GAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAGCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 1:1010225/99‑1 AGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCAT < 1:2536194/100‑1 AGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCAT < 2:1870510/100‑1 AGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCAT < 1:1868214/100‑1 GCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCAGTGAGC < 1:345227/100‑1 TAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCAC < 1:2284727/100‑1 CCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAA > 1:611978/1‑100 CCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCA > 2:485915/1‑99 CTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAAT < 2:1023778/100‑1 nATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTT > 1:1388083/2‑100 GATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTT < 1:1661387/100‑1 ATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < 2:2302885/100‑1 TAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTCG < 2:339262/100‑1 AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628645‑4628749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTCG < NC_000913/4628768‑4628670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |