New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 462874995 (1.040)12 (0.140) 8/164 NT 12.2% noncoding (55/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 4628768 86 (1.020)noncoding (74/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Frequency below cutoff threshold.

Only 100 of 121 total aligned reads displayed.

ACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAT  >  NC_000913/4628669‑4628866
                                                                                                   |                                                                                                  
aCGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGCTGCGACGCTTACCGCGTCtt                                                                                                    <  1:1072388/100‑1 (MQ=255)
aCGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCtt                                                                                                    >  1:1753416/1‑100 (MQ=255)
  gAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTat                                                                                                  <  2:2302885‑M2/100‑3 (MQ=255)
   aaaTTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTatn                                                                                                 >  1:1388083‑M2/1‑97 (MQ=255)
   aaaTTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTatc                                                                                                 <  1:1661387‑M2/100‑4 (MQ=255)
     aTTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTatcag                                                                                               <  2:1023778‑M2/100‑6 (MQ=255)
      ttGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTatcagg                                                                                              >  1:611978‑M2/1‑94 (MQ=255)
       tGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTatcagg                                                                                              >  2:485915‑M2/1‑93 (MQ=255)
        gAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGcc                                                                                            <  2:198132/100‑1 (MQ=255)
        gAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGcc                                                                                            <  2:1313898/100‑1 (MQ=255)
          ggATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa                                                                                          >  1:2566926/1‑100 (MQ=255)
          ggATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa                                                                                          >  1:1606228/1‑100 (MQ=255)
          ggATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa                                                                                          >  2:789892/1‑100 (MQ=255)
           gATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTAc                                                                                         <  2:1473771/100‑1 (MQ=255)
           gATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTAc                                                                                         <  2:1348019/100‑1 (MQ=255)
             tGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAg                                                                                       >  1:1997852/1‑100 (MQ=255)
              gCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGt                                                                                      >  1:1345025/1‑100 (MQ=255)
               cTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtt                                                                                     >  1:455921/1‑100 (MQ=255)
                tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGttt                                                                                    >  2:1919493/1‑100 (MQ=255)
                tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGttt                                                                                    >  2:261491/1‑100 (MQ=255)
                tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGttt                                                                                    >  1:2416047/1‑100 (MQ=255)
                tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGttt                                                                                    >  1:709099/1‑100 (MQ=255)
                 aaGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtttt                                                                                   >  2:2484547/1‑100 (MQ=255)
                     cTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACaa                                                                               >  2:297288/1‑100 (MQ=255)
                       gttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACg                                                                             >  2:1258416/1‑100 (MQ=255)
                       gttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACg                                                                             >  2:93445/1‑100 (MQ=255)
                       gttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACg                                                                             >  2:1988191/1‑100 (MQ=255)
                       gttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACg                                                                             <  1:1763195/100‑1 (MQ=255)
                       gttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACg                                                                             >  2:2179828/1‑100 (MQ=255)
                          gtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTAt                                                                          <  1:561283/100‑1 (MQ=255)
                          gtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTAt                                                                          >  2:1890883/1‑100 (MQ=255)
                            aGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTg                                                                        >  1:1766200/1‑100 (MQ=255)
                             gACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGa                                                                       >  2:655482/1‑100 (MQ=255)
                             gACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGa                                                                       >  1:723882/1‑100 (MQ=255)
                               ccGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGaaa                                                                     >  1:2501710/1‑100 (MQ=255)
                               ccGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGaaa                                                                     <  1:1110686/100‑1 (MQ=255)
                               ccGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGaaa                                                                     >  1:1341626/1‑100 (MQ=255)
                                cGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAAt                                                                    >  2:45619/1‑100 (MQ=255)
                                cGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAAt                                                                    <  2:1621472/100‑1 (MQ=255)
                                cGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGGTTTACAACGTATTGaa                                                                      <  1:2205058/98‑1 (MQ=255)
                                aggAAACGGTGTTCACGCCGCATGCGGCATTCGGTGCTCAATGCCTGGTGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAAt                                                                    >  1:480824/2‑100 (MQ=255)
                                  gAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTg                                                                  <  1:2325461/100‑1 (MQ=255)
                                         tgtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGttt                                                           <  2:433187/100‑1 (MQ=255)
                                         tgtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGttt                                                           <  1:998133/100‑1 (MQ=255)
                                         tgtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGttt                                                           >  1:509768/1‑100 (MQ=255)
                                          gtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGtttt                                                          <  1:767778/100‑1 (MQ=255)
                                          gtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGtttt                                                          >  1:2174694/1‑100 (MQ=255)
                                           ttCACGCCGCATCCGGCATTCGGTGCTCATTGCCGGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTg                                                         <  1:163636/100‑1 (MQ=255)
                                            tCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGATTTGt                                                        >  2:2118512/1‑100 (MQ=255)
                                             cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGt                                                        <  1:1867532/99‑1 (MQ=255)
                                               cgccgcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAgg                                                     >  1:2279792/1‑100 (MQ=255)
                                               cgccgcATCCGGCATTCGGTGCTCAATACCTGATGCGACGCTTACCTCGTCTTATCAGGCCTACAGTTTTACAAGGTATTGCAATTGCTGGTTTTGTAgg                                                     >  1:2279828/1‑100 (MQ=37)
                                                gccgcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGc                                                    <  2:668716/100‑1 (MQ=255)
                                                gccgcATCCGGCATTCGGTGATCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGt                                                        >  1:1578888/1‑96 (MQ=255)
                                                 ccgcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGTCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGcc                                                   <  1:2167269/100‑1 (MQ=255)
                                                   gcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCgg                                                 <  1:1420939/100‑1 (MQ=255)
                                                        cGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAg                                            >  1:2187683/1‑100 (MQ=255)
                                                         ggCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAgg                                           <  2:2227754/100‑1 (MQ=255)
                                                                 gTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagcctta                                   <  1:2284727‑M2/100‑66 (MQ=255)
                                                                   gCTCACTGCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagc                                 <  1:345227‑M2/100‑68 (MQ=255)
                                                                   gCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgcc                                 <  2:2566945/100‑1 (MQ=255)
                                                                    ctaaaTGCATGATACGACGATTACCGCATCTTATCAGGCATACATTTTTACAACGTGTTGCAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGctccg                                <  1:1165718/97‑1 (MQ=25)
                                                                    cTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgccg                                <  2:268940/100‑1 (MQ=255)
                                                                    cTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgccg                                <  2:2424609/100‑1 (MQ=255)
                                                                    cTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgccg                                <  2:2122539/100‑1 (MQ=255)
                                                                     tCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgccgc                               >  2:1178516/1‑100 (MQ=255)
                                                                      cAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgccgag                              >  2:233664/1‑98 (MQ=255)
                                                                      cAATACCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCa                              >  2:422622/1‑100 (MQ=255)
                                                                        aTGCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcct                            <  1:1868214‑M2/100‑73 (MQ=255)
                                                                        aTGCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcct                            <  1:2536194‑M2/100‑73 (MQ=255)
                                                                        aTGCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcct                            <  2:1870510‑M2/100‑73 (MQ=255)
                                                                         tGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATcc                           >  2:1607005/1‑100 (MQ=255)
                                                                          gCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggctgcggcgtgaacaccgtttccggtctacaacagccttagcatcctc                           <  1:1010225‑M2/99‑74 (MQ=255)
                                                                          gCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcctca                          <  2:1916542‑M2/100‑75 (MQ=255)
                                                                          gCCTGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcctca                          <  1:1687286‑M2/100‑75 (MQ=255)
                                                                          gCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCg                          >  2:762419/1‑100 (MQ=255)
                                                                          gCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCg                          <  2:268458/100‑1 (MQ=255)
                                                                            cTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGc                        <  1:1478072/100‑1 (MQ=255)
                                                                             tGATGCGACGCTTACCGCGTCTTatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcctcaatt                       <  1:1708060‑M2/100‑78 (MQ=255)
                                                                             tGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                       >  1:1109533/1‑100 (MQ=255)
                                                                             tGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                       >  2:520774/1‑100 (MQ=255)
                                                                                 gCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAtttt                   >  1:1241436/1‑100 (MQ=255)
                                                                                  cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                  >  2:1011219/1‑100 (MQ=255)
                                                                                  cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                  >  1:2257224/1‑100 (MQ=255)
                                                                                  cGACGCTTACCGCGTCTCatcaggcattgagcaccgaatgccggatgcggcgtgaacaccgtttccggtctacaacagccttagcatcctcaatttcgtg                  <  1:1066358‑M2/100‑83 (MQ=255)
                                                                                   gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTAc                 <  2:666208/100‑1 (MQ=255)
                                                                                    aCGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg                <  2:864681/100‑1 (MQ=255)
                                                                                    aCGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg                <  1:634218/100‑1 (MQ=255)
                                                                                      gCTTACCGCGTCTTATCAGGCCTACAGTTGTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTTACg                <  1:1232620/98‑1 (MQ=255)
                                                                                       cTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCAt             <  1:2514550/100‑1 (MQ=255)
                                                                                        ttACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCAtt            <  2:1836127/100‑1 (MQ=255)
                                                                                         tACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTa           >  2:1868771/1‑100 (MQ=255)
                                                                                          aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc          <  2:1195805/100‑1 (MQ=255)
                                                                                          aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc          >  1:835152/1‑100 (MQ=255)
                                                                                           ccGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACt         >  2:1096878/1‑100 (MQ=255)
                                                                                               gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc     <  2:1283633/100‑1 (MQ=255)
                                                                                               gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc     <  2:1261405/100‑1 (MQ=255)
                                                                                               gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc     <  2:806866/100‑1 (MQ=255)
                                                                                                  ttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAt  <  2:2174708/100‑1 (MQ=255)
                                                                                                  ttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCAGCATCCGGCATTTTACGCATTACTTCGCAAt  >  2:803525/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
ACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAT  >  NC_000913/4628669‑4628866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.