New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	49692 =	84 (0.920)	13 (0.160)	6/158	NT	16.1%	intergenic (+61/‑131)	kefC/folA	potassium:proton antiporter/dihydrofolate reductase
	?	NC_000913	49723 =	61 (0.750)					intergenic (+92/‑100)	kefC/folA	potassium:proton antiporter/dihydrofolate reductase

TTGTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/49800‑49692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggactcgccAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAATCTC  >  NC_000913/49723‑49821                                                                                                                                                                                                                  TTGTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCT                                                                                                              <  1:1643376/100‑1  TGTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTG                                                                                                             <  2:2556754/100‑1  TGTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTG                                                                                                             <  2:644958/100‑1   GTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGG                                                                                                            >  2:1847959/1‑100   GTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGG                                                                                                            >  2:1616201/1‑100      GCCACTATACGTAAAGCTTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACT                                                                                                         <  1:582779/100‑1      GCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGCGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGAC                                                                                                          <  1:947279/99‑1      GCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACT                                                                                                         >  2:678222/1‑100      GCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACT                                                                                                         <  2:1490601/100‑1      GCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACT                                                                                                         <  1:582722/100‑1         ACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGC                                                                                                      <  2:2480188/100‑1         ACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGC                                                                                                      <  2:2248486/100‑1                                                                            GCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTA                                   >  1:978100/1‑100                                                                            GCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTA                                   >  2:1406606/1‑100                                                                            GCTGGCAAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTA                                   >  2:1924507/1‑100                                                                             CTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTAT                                  >  1:2092420/1‑100                                                                             CTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGGTTACGCTTTACGTAT                                  >  1:119732/1‑100                                                                              TGGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATA                                 >  2:35579/1‑100                                                                              TGGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATA                                 >  1:1801336/1‑100                                                                               GGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAG                                >  1:959733/1‑100                                                                               GGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAG                                >  1:1209236/1‑100                                                                               GGCGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGGTTACGCTTTACGTATAG                                >  1:1121287/1‑100                                                                                 CGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCCTCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGT                               >  1:1816473/1‑99                                                                                 CGAGTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTG                              >  2:1600523/1‑100                                                                                    GTCCACGCTCTCTCCCTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCG                           <  1:551636/100‑1                                                                                                     GGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAA‑TTTTTTTATCGGG         <  2:2210341/100‑1                                                                                                     GGACTCGCCAGCACAATATAAAATTTTCCTCAACAGCATCCTCGCACCAATCGACTACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGG          <  2:423915/100‑1                                                                                                      GACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATGGTGGCGACCATTTTTTTTCTCGGG         >  2:674732/1‑100                                                                                                      GACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGG         <  1:2148937/100‑1                                                                                                      GACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGG         <  2:2135579/100‑1                                                                                                         TCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAA      <  1:2010903/100‑1                                                                                                            CCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAATCT   >  2:120657/1‑100                                                                                                             CAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAATCTC  >  2:209074/1‑100                                                                                                             CAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCCACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAATCTC  >  1:1369877/1‑100                                                                                                             CAGCAGAATATAAAATCTTCCTCCACATCCTCCGCGCGCCAGTCGACGTCGGTTTACGCTTTACGTATAGTGGCGACAATTTCTTTTATCGGGAAATCTn  <  1:1171108/100‑2                                                                                                                                                                                                                  TTGTCGCCACTATACGTAAAGCGTAAACCGTCGTCGACTGGTGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/49800‑49692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggactcgccAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAATCTC  >  NC_000913/49723‑49821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.